miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24846 5' -51.2 NC_005284.1 + 53344 0.66 0.87746
Target:  5'- uGCGGcuGUCGCUUCGCcaGCGCA-GUg -3'
miRNA:   3'- cCGCU--UAGCGAAGCGucUGUGUuCGu -5'
24846 5' -51.2 NC_005284.1 + 50276 0.68 0.825183
Target:  5'- aGGCG-AUCGUgaaGCGGAU-CAAGCGg -3'
miRNA:   3'- -CCGCuUAGCGaagCGUCUGuGUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 48259 0.69 0.765159
Target:  5'- cGGCGcGUUGCcgUGCGGGCACugagGAGCc -3'
miRNA:   3'- -CCGCuUAGCGaaGCGUCUGUG----UUCGu -5'
24846 5' -51.2 NC_005284.1 + 48175 0.67 0.869376
Target:  5'- uGGCGAAgugaCGCccgUUGCGGugACAgcucgcgcAGCGg -3'
miRNA:   3'- -CCGCUUa---GCGa--AGCGUCugUGU--------UCGU- -5'
24846 5' -51.2 NC_005284.1 + 47806 0.69 0.7756
Target:  5'- gGGCGAG-CGCUUgGCGG-CGCu-GCGa -3'
miRNA:   3'- -CCGCUUaGCGAAgCGUCuGUGuuCGU- -5'
24846 5' -51.2 NC_005284.1 + 45787 0.69 0.754574
Target:  5'- cGCGAccgccUUGCUgaUCGUGGugACAAGCGg -3'
miRNA:   3'- cCGCUu----AGCGA--AGCGUCugUGUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 40865 0.66 0.900067
Target:  5'- uGGCGGAUCGgaUUGCcgAGuucaGCGCgGAGCAu -3'
miRNA:   3'- -CCGCUUAGCgaAGCG--UC----UGUG-UUCGU- -5'
24846 5' -51.2 NC_005284.1 + 37852 0.71 0.66615
Target:  5'- gGGUGAGUCGUcgugcuaggaUUCGCAaaaaAUACAAGCGg -3'
miRNA:   3'- -CCGCUUAGCG----------AAGCGUc---UGUGUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 37095 0.66 0.892811
Target:  5'- cGGCGAgauucagggcGUCGCgcacgaUCGC--GCGCAGGUAg -3'
miRNA:   3'- -CCGCU----------UAGCGa-----AGCGucUGUGUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 36078 0.71 0.654816
Target:  5'- uGCGAGagcuugauuUCGUccggUGCGGGCGCGAGCAg -3'
miRNA:   3'- cCGCUU---------AGCGaa--GCGUCUGUGUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 35968 0.68 0.805921
Target:  5'- uGGUGAugcUCGCUUCGCGaACAaucAGCGu -3'
miRNA:   3'- -CCGCUu--AGCGAAGCGUcUGUgu-UCGU- -5'
24846 5' -51.2 NC_005284.1 + 35417 1.12 0.001665
Target:  5'- cGGCGAAUCGCUUCGCAGACACAAGCAc -3'
miRNA:   3'- -CCGCUUAGCGAAGCGUCUGUGUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 34525 0.67 0.851554
Target:  5'- uGGCGAugccGUUGCgggUGUAGucguccaACACGAGCAu -3'
miRNA:   3'- -CCGCU----UAGCGaa-GCGUC-------UGUGUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 32678 0.66 0.885274
Target:  5'- cGGCGGGg-GCca-GCGGAcCGCAAGCGc -3'
miRNA:   3'- -CCGCUUagCGaagCGUCU-GUGUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 31823 0.69 0.754574
Target:  5'- gGGCGAgaAUUGCUUC-CAGuucuucCGCAAGCu -3'
miRNA:   3'- -CCGCU--UAGCGAAGcGUCu-----GUGUUCGu -5'
24846 5' -51.2 NC_005284.1 + 28877 0.66 0.907036
Target:  5'- cGGuCGAA-CGCUgCGCAGugAgGuAGCAg -3'
miRNA:   3'- -CC-GCUUaGCGAaGCGUCugUgU-UCGU- -5'
24846 5' -51.2 NC_005284.1 + 28379 0.69 0.765159
Target:  5'- aGCGAcGagGCUUUGCGGGCAacagcCGAGCAu -3'
miRNA:   3'- cCGCU-UagCGAAGCGUCUGU-----GUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 27648 0.66 0.913716
Target:  5'- cGC-AGUUGCaUCGCAGAUgcgucgcgGCGGGCAc -3'
miRNA:   3'- cCGcUUAGCGaAGCGUCUG--------UGUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 23366 0.67 0.86103
Target:  5'- cGGCGcacGUCGCc-CGCGaacuGGCGCAAGCc -3'
miRNA:   3'- -CCGCu--UAGCGaaGCGU----CUGUGUUCGu -5'
24846 5' -51.2 NC_005284.1 + 23050 0.67 0.852428
Target:  5'- aGCGcuAUCGCUggcUGCGGGaGCGAGCAu -3'
miRNA:   3'- cCGCu-UAGCGAa--GCGUCUgUGUUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.