miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24846 5' -51.2 NC_005284.1 + 7875 0.68 0.795992
Target:  5'- uGGCGAAaaGa-UCGCAGuGCGCGAGCc -3'
miRNA:   3'- -CCGCUUagCgaAGCGUC-UGUGUUCGu -5'
24846 5' -51.2 NC_005284.1 + 9858 0.69 0.731925
Target:  5'- cGGCGAucAUCGC-UCGCgAGACgGCAgccgcacAGCAg -3'
miRNA:   3'- -CCGCU--UAGCGaAGCG-UCUG-UGU-------UCGU- -5'
24846 5' -51.2 NC_005284.1 + 9524 0.69 0.733015
Target:  5'- cGGCGAG-CGCUcgUCGaggAGACGauCAAGCAa -3'
miRNA:   3'- -CCGCUUaGCGA--AGCg--UCUGU--GUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 31823 0.69 0.754574
Target:  5'- gGGCGAgaAUUGCUUC-CAGuucuucCGCAAGCu -3'
miRNA:   3'- -CCGCU--UAGCGAAGcGUCu-----GUGUUCGu -5'
24846 5' -51.2 NC_005284.1 + 28379 0.69 0.765159
Target:  5'- aGCGAcGagGCUUUGCGGGCAacagcCGAGCAu -3'
miRNA:   3'- cCGCU-UagCGAAGCGUCUGU-----GUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 48259 0.69 0.765159
Target:  5'- cGGCGcGUUGCcgUGCGGGCACugagGAGCc -3'
miRNA:   3'- -CCGCuUAGCGaaGCGUCUGUG----UUCGu -5'
24846 5' -51.2 NC_005284.1 + 47806 0.69 0.7756
Target:  5'- gGGCGAG-CGCUUgGCGG-CGCu-GCGa -3'
miRNA:   3'- -CCGCUUaGCGAAgCGUCuGUGuuCGU- -5'
24846 5' -51.2 NC_005284.1 + 15085 0.68 0.78486
Target:  5'- aGGCGcAcgCGC-UCGCAGaguauccGCGCGAGUg -3'
miRNA:   3'- -CCGC-UuaGCGaAGCGUC-------UGUGUUCGu -5'
24846 5' -51.2 NC_005284.1 + 9473 0.68 0.785881
Target:  5'- gGGC-AAUcCGCagUCGCGgcGACGCAGGCGg -3'
miRNA:   3'- -CCGcUUA-GCGa-AGCGU--CUGUGUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 16862 0.7 0.699899
Target:  5'- cGGCGggUCGUaugCGCAGGUGCuGGCc -3'
miRNA:   3'- -CCGCuuAGCGaa-GCGUCUGUGuUCGu -5'
24846 5' -51.2 NC_005284.1 + 4046 0.7 0.688703
Target:  5'- cGGCGGAuugccaUCGCUUC-CGGAauuCGAGCGg -3'
miRNA:   3'- -CCGCUU------AGCGAAGcGUCUgu-GUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 37852 0.71 0.66615
Target:  5'- gGGUGAGUCGUcgugcuaggaUUCGCAaaaaAUACAAGCGg -3'
miRNA:   3'- -CCGCUUAGCG----------AAGCGUc---UGUGUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 17721 0.78 0.280142
Target:  5'- cGGCGu-UCgGCUgcacgUCGCAGGCGCAGGCGc -3'
miRNA:   3'- -CCGCuuAG-CGA-----AGCGUCUGUGUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 9343 0.77 0.326769
Target:  5'- cGGCGAGUCGgaUCaagcgaCGGGCGCGAGCGc -3'
miRNA:   3'- -CCGCUUAGCgaAGc-----GUCUGUGUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 15239 0.71 0.620726
Target:  5'- gGGCGAgauuGUCGCUcucguucauUCGCAucccGGCGCAucGGCAc -3'
miRNA:   3'- -CCGCU----UAGCGA---------AGCGU----CUGUGU--UCGU- -5'
24846 5' -51.2 NC_005284.1 + 9636 0.71 0.632093
Target:  5'- cGGCGGAg-GCUucagCGCAGGC-CGAGCu -3'
miRNA:   3'- -CCGCUUagCGAa---GCGUCUGuGUUCGu -5'
24846 5' -51.2 NC_005284.1 + 14709 0.71 0.643461
Target:  5'- uGGCGGAUCGa---GCAGAagagcgACGAGCAg -3'
miRNA:   3'- -CCGCUUAGCgaagCGUCUg-----UGUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 9433 0.71 0.643461
Target:  5'- cGGCGuGUCGC-UCGCGG-C-CGGGCGg -3'
miRNA:   3'- -CCGCuUAGCGaAGCGUCuGuGUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 15809 0.71 0.651411
Target:  5'- aGCGAGaCGCUUCGCAugauaaggcuguacGGCACGcucGGCGu -3'
miRNA:   3'- cCGCUUaGCGAAGCGU--------------CUGUGU---UCGU- -5'
24846 5' -51.2 NC_005284.1 + 36078 0.71 0.654816
Target:  5'- uGCGAGagcuugauuUCGUccggUGCGGGCGCGAGCAg -3'
miRNA:   3'- cCGCUU---------AGCGaa--GCGUCUGUGUUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.