miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24846 5' -51.2 NC_005284.1 + 27648 0.66 0.913716
Target:  5'- cGC-AGUUGCaUCGCAGAUgcgucgcgGCGGGCAc -3'
miRNA:   3'- cCGcUUAGCGaAGCGUCUG--------UGUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 21347 0.66 0.892811
Target:  5'- uGCGGAUCGaCUaccgCGCAGGCGu--GCAa -3'
miRNA:   3'- cCGCUUAGC-GAa---GCGUCUGUguuCGU- -5'
24846 5' -51.2 NC_005284.1 + 23366 0.67 0.86103
Target:  5'- cGGCGcacGUCGCc-CGCGaacuGGCGCAAGCc -3'
miRNA:   3'- -CCGCu--UAGCGaaGCGU----CUGUGUUCGu -5'
24846 5' -51.2 NC_005284.1 + 23050 0.67 0.852428
Target:  5'- aGCGcuAUCGCUggcUGCGGGaGCGAGCAu -3'
miRNA:   3'- cCGCu-UAGCGAa--GCGUCUgUGUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 7357 0.66 0.900067
Target:  5'- cGGCGAGUCcuCUUCGCGGAUcucguuCGuGCu -3'
miRNA:   3'- -CCGCUUAGc-GAAGCGUCUGu-----GUuCGu -5'
24846 5' -51.2 NC_005284.1 + 9235 0.68 0.815655
Target:  5'- gGGCGAcgCGCcaCGCGGcggcauagaGCGCgGAGCAu -3'
miRNA:   3'- -CCGCUuaGCGaaGCGUC---------UGUG-UUCGU- -5'
24846 5' -51.2 NC_005284.1 + 45787 0.69 0.754574
Target:  5'- cGCGAccgccUUGCUgaUCGUGGugACAAGCGg -3'
miRNA:   3'- cCGCUu----AGCGA--AGCGUCugUGUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 35417 1.12 0.001665
Target:  5'- cGGCGAAUCGCUUCGCAGACACAAGCAc -3'
miRNA:   3'- -CCGCUUAGCGAAGCGUCUGUGUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 8613 0.66 0.900067
Target:  5'- cGGCGAGUucgccuucCGUUUCGUccacaacggAGGCGguGGCAg -3'
miRNA:   3'- -CCGCUUA--------GCGAAGCG---------UCUGUguUCGU- -5'
24846 5' -51.2 NC_005284.1 + 7159 0.66 0.909743
Target:  5'- gGGCGAca-GCUUCGCAagcuucagcgcgugcGACACA-GUg -3'
miRNA:   3'- -CCGCUuagCGAAGCGU---------------CUGUGUuCGu -5'
24846 5' -51.2 NC_005284.1 + 9473 0.68 0.785881
Target:  5'- gGGC-AAUcCGCagUCGCGgcGACGCAGGCGg -3'
miRNA:   3'- -CCGcUUA-GCGa-AGCGU--CUGUGUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 31823 0.69 0.754574
Target:  5'- gGGCGAgaAUUGCUUC-CAGuucuucCGCAAGCu -3'
miRNA:   3'- -CCGCU--UAGCGAAGcGUCu-----GUGUUCGu -5'
24846 5' -51.2 NC_005284.1 + 9524 0.69 0.733015
Target:  5'- cGGCGAG-CGCUcgUCGaggAGACGauCAAGCAa -3'
miRNA:   3'- -CCGCUUaGCGA--AGCg--UCUGU--GUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 9858 0.69 0.731925
Target:  5'- cGGCGAucAUCGC-UCGCgAGACgGCAgccgcacAGCAg -3'
miRNA:   3'- -CCGCU--UAGCGaAGCG-UCUG-UGU-------UCGU- -5'
24846 5' -51.2 NC_005284.1 + 16862 0.7 0.699899
Target:  5'- cGGCGggUCGUaugCGCAGGUGCuGGCc -3'
miRNA:   3'- -CCGCuuAGCGaa-GCGUCUGUGuUCGu -5'
24846 5' -51.2 NC_005284.1 + 4046 0.7 0.688703
Target:  5'- cGGCGGAuugccaUCGCUUC-CGGAauuCGAGCGg -3'
miRNA:   3'- -CCGCUU------AGCGAAGcGUCUgu-GUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 37852 0.71 0.66615
Target:  5'- gGGUGAGUCGUcgugcuaggaUUCGCAaaaaAUACAAGCGg -3'
miRNA:   3'- -CCGCUUAGCG----------AAGCGUc---UGUGUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 9433 0.71 0.643461
Target:  5'- cGGCGuGUCGC-UCGCGG-C-CGGGCGg -3'
miRNA:   3'- -CCGCuUAGCGaAGCGUCuGuGUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 14709 0.71 0.643461
Target:  5'- uGGCGGAUCGa---GCAGAagagcgACGAGCAg -3'
miRNA:   3'- -CCGCUUAGCgaagCGUCUg-----UGUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 9343 0.77 0.326769
Target:  5'- cGGCGAGUCGgaUCaagcgaCGGGCGCGAGCGc -3'
miRNA:   3'- -CCGCUUAGCgaAGc-----GUCUGUGUUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.