miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24847 3' -51.3 NC_005284.1 + 45847 0.66 0.908641
Target:  5'- gAAUCGGGCAUcGAAccguuUGCUacguGGAGCGc -3'
miRNA:   3'- gUUAGCCCGUA-CUU-----ACGGg---UCUUGCc -5'
24847 3' -51.3 NC_005284.1 + 1798 0.66 0.908641
Target:  5'- uCAAUCaGGGC-UGuuUGCUCGaAACGGa -3'
miRNA:   3'- -GUUAG-CCCGuACuuACGGGUcUUGCC- -5'
24847 3' -51.3 NC_005284.1 + 17814 0.66 0.887213
Target:  5'- aGGUCGGGCucgacggGAcgcuuuGUGCgCCGGGACaGGu -3'
miRNA:   3'- gUUAGCCCGua-----CU------UACG-GGUCUUG-CC- -5'
24847 3' -51.3 NC_005284.1 + 16530 0.66 0.887213
Target:  5'- ---cCGGGCGcgcUGGcgGCaCCAGGACa- -3'
miRNA:   3'- guuaGCCCGU---ACUuaCG-GGUCUUGcc -5'
24847 3' -51.3 NC_005284.1 + 15674 0.67 0.879515
Target:  5'- uCAcgCGGGCGUGuAU-CUCGGuGACGGg -3'
miRNA:   3'- -GUuaGCCCGUACuUAcGGGUC-UUGCC- -5'
24847 3' -51.3 NC_005284.1 + 9293 0.67 0.86332
Target:  5'- aCGAUCGGGCAgacgaUGAcgcGCCUgcAG-ACGGa -3'
miRNA:   3'- -GUUAGCCCGU-----ACUua-CGGG--UCuUGCC- -5'
24847 3' -51.3 NC_005284.1 + 42875 0.67 0.854837
Target:  5'- cCGAUUGGGCGggccucucgaUGGAcgaUGCCgAGAgGCGGc -3'
miRNA:   3'- -GUUAGCCCGU----------ACUU---ACGGgUCU-UGCC- -5'
24847 3' -51.3 NC_005284.1 + 17984 0.67 0.846109
Target:  5'- -cGUCGGGUAU---UGCCCAGGcgcGCGc -3'
miRNA:   3'- guUAGCCCGUAcuuACGGGUCU---UGCc -5'
24847 3' -51.3 NC_005284.1 + 13790 0.68 0.837143
Target:  5'- gGGUUGGGCGgguUGAGcUGCCuCGGGuucuCGGg -3'
miRNA:   3'- gUUAGCCCGU---ACUU-ACGG-GUCUu---GCC- -5'
24847 3' -51.3 NC_005284.1 + 38891 0.69 0.778948
Target:  5'- cCGGUgGGuuGUGAuUGCCCgcAGGGCGGg -3'
miRNA:   3'- -GUUAgCCcgUACUuACGGG--UCUUGCC- -5'
24847 3' -51.3 NC_005284.1 + 50556 0.7 0.692861
Target:  5'- gGAUCGGGCAUaugagGAAUGggagCCGGuACGGg -3'
miRNA:   3'- gUUAGCCCGUA-----CUUACg---GGUCuUGCC- -5'
24847 3' -51.3 NC_005284.1 + 34954 1.11 0.00204
Target:  5'- cCAAUCGGGCAUGAAUGCCCAGAACGGu -3'
miRNA:   3'- -GUUAGCCCGUACUUACGGGUCUUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.