miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24848 5' -52.7 NC_005284.1 + 29850 0.66 0.880235
Target:  5'- gUCGACGgucAAGcCGACGcaucuCGCGauggucggcGCCGGCg -3'
miRNA:   3'- -AGUUGCa--UUC-GCUGCu----GCGC---------UGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 47922 0.66 0.880235
Target:  5'- cCGACGgccaAGGUGAuccugaucuuucUGGCGCGguugGCCGACg -3'
miRNA:   3'- aGUUGCa---UUCGCU------------GCUGCGC----UGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 22258 0.66 0.880235
Target:  5'- -gGGCG-GGGCGGCGcuguacuucAUGCGACCGcCa -3'
miRNA:   3'- agUUGCaUUCGCUGC---------UGCGCUGGCuG- -5'
24848 5' -52.7 NC_005284.1 + 29259 0.66 0.880235
Target:  5'- gCGACGc--GCGcACGACGaCGGCCG-Cu -3'
miRNA:   3'- aGUUGCauuCGC-UGCUGC-GCUGGCuG- -5'
24848 5' -52.7 NC_005284.1 + 9196 0.66 0.880235
Target:  5'- gCAGCGUGuaugugaucaGGCGuCGauagccgaguGCGCGGgCGACg -3'
miRNA:   3'- aGUUGCAU----------UCGCuGC----------UGCGCUgGCUG- -5'
24848 5' -52.7 NC_005284.1 + 5043 0.66 0.875591
Target:  5'- gUCAGCGUucauGccauccaucacgcucGCGaauGCGACGcCGAUCGACa -3'
miRNA:   3'- -AGUUGCAu---U---------------CGC---UGCUGC-GCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 24262 0.66 0.872444
Target:  5'- gUCAGCGUaAAGCGcgaguugaacAUGACGUuuggugauaGGCCGAUu -3'
miRNA:   3'- -AGUUGCA-UUCGC----------UGCUGCG---------CUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 26035 0.66 0.872444
Target:  5'- cUCGAUGUcGGCGACccCG-GAUCGACu -3'
miRNA:   3'- -AGUUGCAuUCGCUGcuGCgCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 7697 0.66 0.872444
Target:  5'- aCAGCGUGcGCGugaGCGGUGCG-CCGAa -3'
miRNA:   3'- aGUUGCAUuCGC---UGCUGCGCuGGCUg -5'
24848 5' -52.7 NC_005284.1 + 7809 0.66 0.872444
Target:  5'- gCAGCuugGAGCGguACGACGCcauuuCCGACc -3'
miRNA:   3'- aGUUGca-UUCGC--UGCUGCGcu---GGCUG- -5'
24848 5' -52.7 NC_005284.1 + 44885 0.66 0.872444
Target:  5'- -gAGCGcGAGCGACGcuucgGCGCG-CUGAg -3'
miRNA:   3'- agUUGCaUUCGCUGC-----UGCGCuGGCUg -5'
24848 5' -52.7 NC_005284.1 + 23111 0.66 0.864399
Target:  5'- aCuACGUGAGCGcUGGCGC-AgCGGCa -3'
miRNA:   3'- aGuUGCAUUCGCuGCUGCGcUgGCUG- -5'
24848 5' -52.7 NC_005284.1 + 39294 0.66 0.864399
Target:  5'- gUCGG-GUAAcGCGACGcCGCGcUCGGCg -3'
miRNA:   3'- -AGUUgCAUU-CGCUGCuGCGCuGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 47766 0.66 0.863581
Target:  5'- gUCcGCGUAAGCagaucgaGGCGGCGCucgcggaggcGACgGGCg -3'
miRNA:   3'- -AGuUGCAUUCG-------CUGCUGCG----------CUGgCUG- -5'
24848 5' -52.7 NC_005284.1 + 27636 0.66 0.861937
Target:  5'- -gAACGUGcGCGACGAcaaccucgggcaauCGCcgcuauacgGGCCGGCg -3'
miRNA:   3'- agUUGCAUuCGCUGCU--------------GCG---------CUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 33166 0.66 0.856108
Target:  5'- cUCGGCGUcGAGCG-CGGCGCGcgaGAUc -3'
miRNA:   3'- -AGUUGCA-UUCGCuGCUGCGCuggCUG- -5'
24848 5' -52.7 NC_005284.1 + 37172 0.66 0.856108
Target:  5'- gUCGgauCGUuguAGCuGACGAgCGCGACCGu- -3'
miRNA:   3'- -AGUu--GCAu--UCG-CUGCU-GCGCUGGCug -5'
24848 5' -52.7 NC_005284.1 + 896 0.66 0.856108
Target:  5'- cCAAgGcAAGCGACGACgGCcGCCG-Ca -3'
miRNA:   3'- aGUUgCaUUCGCUGCUG-CGcUGGCuG- -5'
24848 5' -52.7 NC_005284.1 + 50257 0.66 0.850163
Target:  5'- gCGACGcugAAGCGucagaagGCGAUcgugaagcggaucaaGCGGCCGACc -3'
miRNA:   3'- aGUUGCa--UUCGC-------UGCUG---------------CGCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 18502 0.66 0.84758
Target:  5'- cUCGGCGUGacgucgauuccGGCGuACGGCGUcgauacgcaacuGACCGGg -3'
miRNA:   3'- -AGUUGCAU-----------UCGC-UGCUGCG------------CUGGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.