Results 41 - 60 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24848 | 5' | -52.7 | NC_005284.1 | + | 13981 | 0.69 | 0.719487 |
Target: 5'- cUCGAaa-AAGUGAUGGCGCGGCUGcGCg -3' miRNA: 3'- -AGUUgcaUUCGCUGCUGCGCUGGC-UG- -5' |
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24848 | 5' | -52.7 | NC_005284.1 | + | 42756 | 0.69 | 0.719487 |
Target: 5'- aUCAuuACGUGGGCGAU--UGCGACC-ACg -3' miRNA: 3'- -AGU--UGCAUUCGCUGcuGCGCUGGcUG- -5' |
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24848 | 5' | -52.7 | NC_005284.1 | + | 46539 | 0.69 | 0.697825 |
Target: 5'- cCAACGUcuugccGAGCcGCaGCGCGAgCGACa -3' miRNA: 3'- aGUUGCA------UUCGcUGcUGCGCUgGCUG- -5' |
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24848 | 5' | -52.7 | NC_005284.1 | + | 18434 | 0.68 | 0.781987 |
Target: 5'- aCAuCGUc-GCGGcCGGCGCGAUCGAg -3' miRNA: 3'- aGUuGCAuuCGCU-GCUGCGCUGGCUg -5' |
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24848 | 5' | -52.7 | NC_005284.1 | + | 33112 | 0.68 | 0.751291 |
Target: 5'- gUCGACGgcGGCcaccgcCGACGCGG-CGGCa -3' miRNA: 3'- -AGUUGCauUCGcu----GCUGCGCUgGCUG- -5' |
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24848 | 5' | -52.7 | NC_005284.1 | + | 21317 | 0.68 | 0.748155 |
Target: 5'- gCAGCGccGGcCGACGGCGCguguaagcacugcgGAUCGACu -3' miRNA: 3'- aGUUGCauUC-GCUGCUGCG--------------CUGGCUG- -5' |
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24848 | 5' | -52.7 | NC_005284.1 | + | 36523 | 0.68 | 0.740797 |
Target: 5'- -gGACGUucgacGGCGGCGGCuGC-ACCGAUg -3' miRNA: 3'- agUUGCAu----UCGCUGCUG-CGcUGGCUG- -5' |
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24848 | 5' | -52.7 | NC_005284.1 | + | 16680 | 0.68 | 0.751291 |
Target: 5'- -gAGCGUGaggccGGCGuCGGCGUGccGCUGACg -3' miRNA: 3'- agUUGCAU-----UCGCuGCUGCGC--UGGCUG- -5' |
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24848 | 5' | -52.7 | NC_005284.1 | + | 45974 | 0.68 | 0.761661 |
Target: 5'- gCAGCGU-GGCGugGACgaguggauuGCGucauuGCCGGCu -3' miRNA: 3'- aGUUGCAuUCGCugCUG---------CGC-----UGGCUG- -5' |
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24848 | 5' | -52.7 | NC_005284.1 | + | 7857 | 0.68 | 0.77088 |
Target: 5'- -gAGCGUAccggaauggAGUGGCGaaaagaucgcaguGCGCGAgCCGACg -3' miRNA: 3'- agUUGCAU---------UCGCUGC-------------UGCGCU-GGCUG- -5' |
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24848 | 5' | -52.7 | NC_005284.1 | + | 8565 | 0.68 | 0.781987 |
Target: 5'- gUCAGCGUua-CGGCGAauaCGACCGAa -3' miRNA: 3'- -AGUUGCAuucGCUGCUgc-GCUGGCUg -5' |
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24848 | 5' | -52.7 | NC_005284.1 | + | 51393 | 0.68 | 0.781987 |
Target: 5'- uUCAGCG--GGCu-CGACGCGGCgGAa -3' miRNA: 3'- -AGUUGCauUCGcuGCUGCGCUGgCUg -5' |
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24848 | 5' | -52.7 | NC_005284.1 | + | 42015 | 0.68 | 0.740797 |
Target: 5'- aCAGCGUAucuucGCGA--GCGCGuGCCGGCc -3' miRNA: 3'- aGUUGCAUu----CGCUgcUGCGC-UGGCUG- -5' |
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24848 | 5' | -52.7 | NC_005284.1 | + | 48817 | 0.67 | 0.791918 |
Target: 5'- gCAuCGUucGCGACGAuCG-GAUCGGCg -3' miRNA: 3'- aGUuGCAuuCGCUGCU-GCgCUGGCUG- -5' |
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24848 | 5' | -52.7 | NC_005284.1 | + | 39191 | 0.67 | 0.811262 |
Target: 5'- gCAACGUc----ACGuCGCGGCCGACg -3' miRNA: 3'- aGUUGCAuucgcUGCuGCGCUGGCUG- -5' |
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24848 | 5' | -52.7 | NC_005284.1 | + | 8340 | 0.67 | 0.820653 |
Target: 5'- cUCGGCGgcauuCGGCGACGgCGAUCGGu -3' miRNA: 3'- -AGUUGCauuc-GCUGCUGC-GCUGGCUg -5' |
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24848 | 5' | -52.7 | NC_005284.1 | + | 23099 | 0.67 | 0.829843 |
Target: 5'- --cAUGUGggGGCGgaaACGACG-GGCCGACa -3' miRNA: 3'- aguUGCAU--UCGC---UGCUGCgCUGGCUG- -5' |
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24848 | 5' | -52.7 | NC_005284.1 | + | 49919 | 0.67 | 0.829843 |
Target: 5'- aUCGgauACG-AAGCGuCGAUGaCGACUGAUa -3' miRNA: 3'- -AGU---UGCaUUCGCuGCUGC-GCUGGCUG- -5' |
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24848 | 5' | -52.7 | NC_005284.1 | + | 7954 | 0.67 | 0.820653 |
Target: 5'- gUAACGgagGGCGACGACGaaa-CGGCg -3' miRNA: 3'- aGUUGCau-UCGCUGCUGCgcugGCUG- -5' |
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24848 | 5' | -52.7 | NC_005284.1 | + | 5977 | 0.67 | 0.791918 |
Target: 5'- cCGAuCGUc-GCGACGAUGCGAUucgggCGGCa -3' miRNA: 3'- aGUU-GCAuuCGCUGCUGCGCUG-----GCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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