miRNA display CGI


Results 61 - 80 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24848 5' -52.7 NC_005284.1 + 7336 0.67 0.811262
Target:  5'- gUCGAgGUGucgaaaguuGCGucgaccgaucuCGACGCGGCCGAUc -3'
miRNA:   3'- -AGUUgCAUu--------CGCu----------GCUGCGCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 50688 0.67 0.80168
Target:  5'- aUCGucUGUGAGCGGaaGCGCGAgaUCGACg -3'
miRNA:   3'- -AGUu-GCAUUCGCUgcUGCGCU--GGCUG- -5'
24848 5' -52.7 NC_005284.1 + 49607 0.67 0.80168
Target:  5'- uUCGGCGUcAAGUGGCGuuugagcugaucGCGCGucagcggcguuCCGACg -3'
miRNA:   3'- -AGUUGCA-UUCGCUGC------------UGCGCu----------GGCUG- -5'
24848 5' -52.7 NC_005284.1 + 10125 0.67 0.80168
Target:  5'- -aAGCGc-GGCGACGGCGCaGA-CGGCg -3'
miRNA:   3'- agUUGCauUCGCUGCUGCG-CUgGCUG- -5'
24848 5' -52.7 NC_005284.1 + 10283 0.67 0.800712
Target:  5'- aCAACGcGAGCagcGCGACGUcgagucuGAUCGACa -3'
miRNA:   3'- aGUUGCaUUCGc--UGCUGCG-------CUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 26391 0.67 0.791918
Target:  5'- aUCAACGgcAGCGugGcUGCG-CCGc- -3'
miRNA:   3'- -AGUUGCauUCGCugCuGCGCuGGCug -5'
24848 5' -52.7 NC_005284.1 + 5977 0.67 0.791918
Target:  5'- cCGAuCGUc-GCGACGAUGCGAUucgggCGGCa -3'
miRNA:   3'- aGUU-GCAuuCGCUGCUGCGCUG-----GCUG- -5'
24848 5' -52.7 NC_005284.1 + 49919 0.67 0.829843
Target:  5'- aUCGgauACG-AAGCGuCGAUGaCGACUGAUa -3'
miRNA:   3'- -AGU---UGCaUUCGCuGCUGC-GCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 20123 0.66 0.838822
Target:  5'- gUCAACGUGAGUGAguaCGucaucacUGCGGCaGACg -3'
miRNA:   3'- -AGUUGCAUUCGCU---GCu------GCGCUGgCUG- -5'
24848 5' -52.7 NC_005284.1 + 27636 0.66 0.861937
Target:  5'- -gAACGUGcGCGACGAcaaccucgggcaauCGCcgcuauacgGGCCGGCg -3'
miRNA:   3'- agUUGCAUuCGCUGCU--------------GCG---------CUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 47766 0.66 0.863581
Target:  5'- gUCcGCGUAAGCagaucgaGGCGGCGCucgcggaggcGACgGGCg -3'
miRNA:   3'- -AGuUGCAUUCG-------CUGCUGCG----------CUGgCUG- -5'
24848 5' -52.7 NC_005284.1 + 7697 0.66 0.872444
Target:  5'- aCAGCGUGcGCGugaGCGGUGCG-CCGAa -3'
miRNA:   3'- aGUUGCAUuCGC---UGCUGCGCuGGCUg -5'
24848 5' -52.7 NC_005284.1 + 26035 0.66 0.872444
Target:  5'- cUCGAUGUcGGCGACccCG-GAUCGACu -3'
miRNA:   3'- -AGUUGCAuUCGCUGcuGCgCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 50257 0.66 0.850163
Target:  5'- gCGACGcugAAGCGucagaagGCGAUcgugaagcggaucaaGCGGCCGACc -3'
miRNA:   3'- aGUUGCa--UUCGC-------UGCUG---------------CGCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 5043 0.66 0.875591
Target:  5'- gUCAGCGUucauGccauccaucacgcucGCGaauGCGACGcCGAUCGACa -3'
miRNA:   3'- -AGUUGCAu---U---------------CGC---UGCUGC-GCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 47922 0.66 0.880235
Target:  5'- cCGACGgccaAGGUGAuccugaucuuucUGGCGCGguugGCCGACg -3'
miRNA:   3'- aGUUGCa---UUCGCU------------GCUGCGC----UGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 9341 0.66 0.84758
Target:  5'- aUCGGCGagucggaucAAGCGACgGGCGCGAgCG-Cg -3'
miRNA:   3'- -AGUUGCa--------UUCGCUG-CUGCGCUgGCuG- -5'
24848 5' -52.7 NC_005284.1 + 5267 0.66 0.84758
Target:  5'- -aAACGcAGGCGAUGACuGCGAaCGAa -3'
miRNA:   3'- agUUGCaUUCGCUGCUG-CGCUgGCUg -5'
24848 5' -52.7 NC_005284.1 + 18502 0.66 0.84758
Target:  5'- cUCGGCGUGacgucgauuccGGCGuACGGCGUcgauacgcaacuGACCGGg -3'
miRNA:   3'- -AGUUGCAU-----------UCGC-UGCUGCG------------CUGGCUg -5'
24848 5' -52.7 NC_005284.1 + 9621 0.66 0.838822
Target:  5'- uUCAgaacGCGcAAGCGGCGgaggcuucaGCGCaGGCCGAg -3'
miRNA:   3'- -AGU----UGCaUUCGCUGC---------UGCG-CUGGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.