miRNA display CGI


Results 1 - 20 of 98 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24848 5' -52.7 NC_005284.1 + 33964 1.11 0.001482
Target:  5'- gUCAACGUAAGCGACGACGCGACCGACg -3'
miRNA:   3'- -AGUUGCAUUCGCUGCUGCGCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 21809 0.77 0.308754
Target:  5'- gCAGCcgguGGCGACGGCGUGcCCGGCg -3'
miRNA:   3'- aGUUGcau-UCGCUGCUGCGCuGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 19398 0.76 0.340708
Target:  5'- aUCGACGaGGGCGGugcaGGCGUGAUCGGCg -3'
miRNA:   3'- -AGUUGCaUUCGCUg---CUGCGCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 11583 0.75 0.366204
Target:  5'- aUCGACGcggagcucGGCGACuACGCGGCCGAg -3'
miRNA:   3'- -AGUUGCau------UCGCUGcUGCGCUGGCUg -5'
24848 5' -52.7 NC_005284.1 + 38837 0.75 0.366204
Target:  5'- -gAACGUGAGgcCGGCGuCGCGcGCCGACg -3'
miRNA:   3'- agUUGCAUUC--GCUGCuGCGC-UGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 22440 0.75 0.383916
Target:  5'- aCAGCGaagaacucGGCGugGACGCuucGGCCGACu -3'
miRNA:   3'- aGUUGCau------UCGCugCUGCG---CUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 20975 0.75 0.39207
Target:  5'- cUCuccuGCGUGcgGGCGAuuacgaaCGGCGCGAUCGACu -3'
miRNA:   3'- -AGu---UGCAU--UCGCU-------GCUGCGCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 26416 0.74 0.411529
Target:  5'- uUCGAgGUGGGCGACGACGaauugcucaGugCGAa -3'
miRNA:   3'- -AGUUgCAUUCGCUGCUGCg--------CugGCUg -5'
24848 5' -52.7 NC_005284.1 + 21911 0.74 0.421002
Target:  5'- uUCGGCGUcgccGGCGACGaucaGCGCGAgaUCGACa -3'
miRNA:   3'- -AGUUGCAu---UCGCUGC----UGCGCU--GGCUG- -5'
24848 5' -52.7 NC_005284.1 + 9491 0.74 0.430607
Target:  5'- gCGACGcAGGCGGCGACagcgugggucgGCGcCCGGCg -3'
miRNA:   3'- aGUUGCaUUCGCUGCUG-----------CGCuGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 18129 0.74 0.440338
Target:  5'- -gAGCGUGcaggaaAGCGACGACGaCGGCCaGAUc -3'
miRNA:   3'- agUUGCAU------UCGCUGCUGC-GCUGG-CUG- -5'
24848 5' -52.7 NC_005284.1 + 50108 0.73 0.460169
Target:  5'- -gAACGUAAcGCGGCGAuCGCGcACgCGGCg -3'
miRNA:   3'- agUUGCAUU-CGCUGCU-GCGC-UG-GCUG- -5'
24848 5' -52.7 NC_005284.1 + 11688 0.73 0.480463
Target:  5'- aUCAaucGCGUGAGCGACGAguuuCGCcgUCGACg -3'
miRNA:   3'- -AGU---UGCAUUCGCUGCU----GCGcuGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 15594 0.73 0.480463
Target:  5'- cUCGACGUcGGCcGCGACGUGACguugcaggucggCGACg -3'
miRNA:   3'- -AGUUGCAuUCGcUGCUGCGCUG------------GCUG- -5'
24848 5' -52.7 NC_005284.1 + 9904 0.73 0.490773
Target:  5'- ---uUGUGAGCGACGGCGUGcGCCGuauCg -3'
miRNA:   3'- aguuGCAUUCGCUGCUGCGC-UGGCu--G- -5'
24848 5' -52.7 NC_005284.1 + 15351 0.72 0.511692
Target:  5'- cUCGGCGUGcaGGcCGAUGGCuCGAUCGGCa -3'
miRNA:   3'- -AGUUGCAU--UC-GCUGCUGcGCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 21849 0.72 0.522289
Target:  5'- cCGGCGUGGGCGAUGGUGCcGCCGcCu -3'
miRNA:   3'- aGUUGCAUUCGCUGCUGCGcUGGCuG- -5'
24848 5' -52.7 NC_005284.1 + 4631 0.72 0.554557
Target:  5'- gCGACGgucGGCaGCGGCGUGAgCGGCa -3'
miRNA:   3'- aGUUGCau-UCGcUGCUGCGCUgGCUG- -5'
24848 5' -52.7 NC_005284.1 + 46640 0.71 0.609476
Target:  5'- -gGACGUAguGGCGAC-ACGCGGCaaGACg -3'
miRNA:   3'- agUUGCAU--UCGCUGcUGCGCUGg-CUG- -5'
24848 5' -52.7 NC_005284.1 + 1126 0.71 0.609476
Target:  5'- gCAACccGGGCGACGGCGCGucGCCa-- -3'
miRNA:   3'- aGUUGcaUUCGCUGCUGCGC--UGGcug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.