miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24848 5' -52.7 NC_005284.1 + 18685 0.7 0.631645
Target:  5'- aCGcCGaaucGCGACGACGCGACCa-- -3'
miRNA:   3'- aGUuGCauu-CGCUGCUGCGCUGGcug -5'
24848 5' -52.7 NC_005284.1 + 20617 0.7 0.631645
Target:  5'- gCAACGUAucuugGGgGACGcugcuauacaACgGCGGCCGACa -3'
miRNA:   3'- aGUUGCAU-----UCgCUGC----------UG-CGCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 10073 0.7 0.631645
Target:  5'- -gAGCGgaacgcGCGGCGAcCGCGACCGcgGCg -3'
miRNA:   3'- agUUGCauu---CGCUGCU-GCGCUGGC--UG- -5'
24848 5' -52.7 NC_005284.1 + 36749 0.7 0.642735
Target:  5'- aUCGGCGUcgAAGCGcucgGCGAgCGUGACCGuguCg -3'
miRNA:   3'- -AGUUGCA--UUCGC----UGCU-GCGCUGGCu--G- -5'
24848 5' -52.7 NC_005284.1 + 12197 0.7 0.642735
Target:  5'- gCGACGggcgGGGCGGUGugGgGACCGGg -3'
miRNA:   3'- aGUUGCa---UUCGCUGCugCgCUGGCUg -5'
24848 5' -52.7 NC_005284.1 + 7992 0.7 0.642735
Target:  5'- uUCGcgcGCGcGAGUGACGACGCGcACaugcaGGCg -3'
miRNA:   3'- -AGU---UGCaUUCGCUGCUGCGC-UGg----CUG- -5'
24848 5' -52.7 NC_005284.1 + 41592 0.7 0.642735
Target:  5'- aUCAACGUAcGCGcGCGAggcCGCG-CCGAg -3'
miRNA:   3'- -AGUUGCAUuCGC-UGCU---GCGCuGGCUg -5'
24848 5' -52.7 NC_005284.1 + 7447 0.7 0.653815
Target:  5'- aUCGACGcGA-CGACGuuCGCGAgCGACg -3'
miRNA:   3'- -AGUUGCaUUcGCUGCu-GCGCUgGCUG- -5'
24848 5' -52.7 NC_005284.1 + 37817 0.7 0.675905
Target:  5'- uUCGGCGUGAuGCGGCGcACGCgGAUCa-- -3'
miRNA:   3'- -AGUUGCAUU-CGCUGC-UGCG-CUGGcug -5'
24848 5' -52.7 NC_005284.1 + 23577 0.7 0.675905
Target:  5'- gCAACGUcgcGGCGAUGcuACGCGAgaucggaaucgaCCGACu -3'
miRNA:   3'- aGUUGCAu--UCGCUGC--UGCGCU------------GGCUG- -5'
24848 5' -52.7 NC_005284.1 + 18961 0.7 0.675905
Target:  5'- cCAugGccGGCGACGcaacgaucuACGCGGgCGACg -3'
miRNA:   3'- aGUugCauUCGCUGC---------UGCGCUgGCUG- -5'
24848 5' -52.7 NC_005284.1 + 15945 0.7 0.675905
Target:  5'- -uGACGUcGGCGcGCGACGcCGGCCcACg -3'
miRNA:   3'- agUUGCAuUCGC-UGCUGC-GCUGGcUG- -5'
24848 5' -52.7 NC_005284.1 + 45061 0.7 0.675905
Target:  5'- -aAGCGUGGGCgGGCGAgCGCGGCU-ACg -3'
miRNA:   3'- agUUGCAUUCG-CUGCU-GCGCUGGcUG- -5'
24848 5' -52.7 NC_005284.1 + 48968 0.7 0.675905
Target:  5'- aUCGACG-AAGCGGUGcuGCGCGGCUgGACg -3'
miRNA:   3'- -AGUUGCaUUCGCUGC--UGCGCUGG-CUG- -5'
24848 5' -52.7 NC_005284.1 + 14179 0.69 0.686892
Target:  5'- uUCGGCGaGAGCGGCcccccaaaGGgGCGGCCGuCg -3'
miRNA:   3'- -AGUUGCaUUCGCUG--------CUgCGCUGGCuG- -5'
24848 5' -52.7 NC_005284.1 + 1368 0.69 0.697825
Target:  5'- aUCGACGaAGGgGACGAUugGACCGAUc -3'
miRNA:   3'- -AGUUGCaUUCgCUGCUGcgCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 46539 0.69 0.697825
Target:  5'- cCAACGUcuugccGAGCcGCaGCGCGAgCGACa -3'
miRNA:   3'- aGUUGCA------UUCGcUGcUGCGCUgGCUG- -5'
24848 5' -52.7 NC_005284.1 + 35782 0.69 0.707611
Target:  5'- gCGGCGUAgagcugaaacaGGCGGCGcuugaagccgugcAUGgGGCCGACa -3'
miRNA:   3'- aGUUGCAU-----------UCGCUGC-------------UGCgCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 21306 0.69 0.707611
Target:  5'- aCAACGgcgAGGCGguucaauGCGG-GCGACUGGCg -3'
miRNA:   3'- aGUUGCa--UUCGC-------UGCUgCGCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 17342 0.69 0.708694
Target:  5'- aUCGcGCGUuacuGCGACGAacuCGUGuCCGACg -3'
miRNA:   3'- -AGU-UGCAuu--CGCUGCU---GCGCuGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.