miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24848 5' -52.7 NC_005284.1 + 5267 0.66 0.84758
Target:  5'- -aAACGcAGGCGAUGACuGCGAaCGAa -3'
miRNA:   3'- agUUGCaUUCGCUGCUG-CGCUgGCUg -5'
24848 5' -52.7 NC_005284.1 + 18502 0.66 0.84758
Target:  5'- cUCGGCGUGacgucgauuccGGCGuACGGCGUcgauacgcaacuGACCGGg -3'
miRNA:   3'- -AGUUGCAU-----------UCGC-UGCUGCG------------CUGGCUg -5'
24848 5' -52.7 NC_005284.1 + 43562 0.66 0.84758
Target:  5'- aCAcACGUGcugucugugcAGCGGCaGAgGCGACCGuCu -3'
miRNA:   3'- aGU-UGCAU----------UCGCUG-CUgCGCUGGCuG- -5'
24848 5' -52.7 NC_005284.1 + 17404 0.66 0.84758
Target:  5'- gCAACGcuacGGCGACGAcCGCGGCg--- -3'
miRNA:   3'- aGUUGCau--UCGCUGCU-GCGCUGgcug -5'
24848 5' -52.7 NC_005284.1 + 20832 0.66 0.838822
Target:  5'- gCAGCGccGGcCGACGA-GCGGgCGGCg -3'
miRNA:   3'- aGUUGCauUC-GCUGCUgCGCUgGCUG- -5'
24848 5' -52.7 NC_005284.1 + 40271 0.66 0.838822
Target:  5'- gCAGCGUcGGCGAUGgcugcuGCGCGuCgGAUg -3'
miRNA:   3'- aGUUGCAuUCGCUGC------UGCGCuGgCUG- -5'
24848 5' -52.7 NC_005284.1 + 20123 0.66 0.838822
Target:  5'- gUCAACGUGAGUGAguaCGucaucacUGCGGCaGACg -3'
miRNA:   3'- -AGUUGCAUUCGCU---GCu------GCGCUGgCUG- -5'
24848 5' -52.7 NC_005284.1 + 38097 0.66 0.838822
Target:  5'- -gGACGUcAGCGGC-ACGCcgacGCCGGCc -3'
miRNA:   3'- agUUGCAuUCGCUGcUGCGc---UGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 4902 0.66 0.838822
Target:  5'- --cGCGUcAGauucuCGACGAUGCG-CCGGCa -3'
miRNA:   3'- aguUGCAuUC-----GCUGCUGCGCuGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 9621 0.66 0.838822
Target:  5'- uUCAgaacGCGcAAGCGGCGgaggcuucaGCGCaGGCCGAg -3'
miRNA:   3'- -AGU----UGCaUUCGCUGC---------UGCG-CUGGCUg -5'
24848 5' -52.7 NC_005284.1 + 23099 0.67 0.829843
Target:  5'- --cAUGUGggGGCGgaaACGACG-GGCCGACa -3'
miRNA:   3'- aguUGCAU--UCGC---UGCUGCgCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 49919 0.67 0.829843
Target:  5'- aUCGgauACG-AAGCGuCGAUGaCGACUGAUa -3'
miRNA:   3'- -AGU---UGCaUUCGCuGCUGC-GCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 8340 0.67 0.820653
Target:  5'- cUCGGCGgcauuCGGCGACGgCGAUCGGu -3'
miRNA:   3'- -AGUUGCauuc-GCUGCUGC-GCUGGCUg -5'
24848 5' -52.7 NC_005284.1 + 7954 0.67 0.820653
Target:  5'- gUAACGgagGGCGACGACGaaa-CGGCg -3'
miRNA:   3'- aGUUGCau-UCGCUGCUGCgcugGCUG- -5'
24848 5' -52.7 NC_005284.1 + 31434 0.67 0.811262
Target:  5'- gCGACGUGcgccGCuGCGGCGCG-CCGGg -3'
miRNA:   3'- aGUUGCAUu---CGcUGCUGCGCuGGCUg -5'
24848 5' -52.7 NC_005284.1 + 39191 0.67 0.811262
Target:  5'- gCAACGUc----ACGuCGCGGCCGACg -3'
miRNA:   3'- aGUUGCAuucgcUGCuGCGCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 7336 0.67 0.811262
Target:  5'- gUCGAgGUGucgaaaguuGCGucgaccgaucuCGACGCGGCCGAUc -3'
miRNA:   3'- -AGUUgCAUu--------CGCu----------GCUGCGCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 49607 0.67 0.80168
Target:  5'- uUCGGCGUcAAGUGGCGuuugagcugaucGCGCGucagcggcguuCCGACg -3'
miRNA:   3'- -AGUUGCA-UUCGCUGC------------UGCGCu----------GGCUG- -5'
24848 5' -52.7 NC_005284.1 + 10125 0.67 0.80168
Target:  5'- -aAGCGc-GGCGACGGCGCaGA-CGGCg -3'
miRNA:   3'- agUUGCauUCGCUGCUGCG-CUgGCUG- -5'
24848 5' -52.7 NC_005284.1 + 50688 0.67 0.80168
Target:  5'- aUCGucUGUGAGCGGaaGCGCGAgaUCGACg -3'
miRNA:   3'- -AGUu-GCAUUCGCUgcUGCGCU--GGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.