miRNA display CGI


Results 41 - 60 of 98 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24848 5' -52.7 NC_005284.1 + 10283 0.67 0.800712
Target:  5'- aCAACGcGAGCagcGCGACGUcgagucuGAUCGACa -3'
miRNA:   3'- aGUUGCaUUCGc--UGCUGCG-------CUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 26391 0.67 0.791918
Target:  5'- aUCAACGgcAGCGugGcUGCG-CCGc- -3'
miRNA:   3'- -AGUUGCauUCGCugCuGCGCuGGCug -5'
24848 5' -52.7 NC_005284.1 + 48817 0.67 0.791918
Target:  5'- gCAuCGUucGCGACGAuCG-GAUCGGCg -3'
miRNA:   3'- aGUuGCAuuCGCUGCU-GCgCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 36294 0.67 0.791918
Target:  5'- aUCGACGUcacgccGAGCGcguucuCGGCGCGcACCcGCg -3'
miRNA:   3'- -AGUUGCA------UUCGCu-----GCUGCGC-UGGcUG- -5'
24848 5' -52.7 NC_005284.1 + 5977 0.67 0.791918
Target:  5'- cCGAuCGUc-GCGACGAUGCGAUucgggCGGCa -3'
miRNA:   3'- aGUU-GCAuuCGCUGCUGCGCUG-----GCUG- -5'
24848 5' -52.7 NC_005284.1 + 18434 0.68 0.781987
Target:  5'- aCAuCGUc-GCGGcCGGCGCGAUCGAg -3'
miRNA:   3'- aGUuGCAuuCGCU-GCUGCGCUGGCUg -5'
24848 5' -52.7 NC_005284.1 + 8565 0.68 0.781987
Target:  5'- gUCAGCGUua-CGGCGAauaCGACCGAa -3'
miRNA:   3'- -AGUUGCAuucGCUGCUgc-GCUGGCUg -5'
24848 5' -52.7 NC_005284.1 + 51393 0.68 0.781987
Target:  5'- uUCAGCG--GGCu-CGACGCGGCgGAa -3'
miRNA:   3'- -AGUUGCauUCGcuGCUGCGCUGgCUg -5'
24848 5' -52.7 NC_005284.1 + 7857 0.68 0.77088
Target:  5'- -gAGCGUAccggaauggAGUGGCGaaaagaucgcaguGCGCGAgCCGACg -3'
miRNA:   3'- agUUGCAU---------UCGCUGC-------------UGCGCU-GGCUG- -5'
24848 5' -52.7 NC_005284.1 + 45974 0.68 0.761661
Target:  5'- gCAGCGU-GGCGugGACgaguggauuGCGucauuGCCGGCu -3'
miRNA:   3'- aGUUGCAuUCGCugCUG---------CGC-----UGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 33112 0.68 0.751291
Target:  5'- gUCGACGgcGGCcaccgcCGACGCGG-CGGCa -3'
miRNA:   3'- -AGUUGCauUCGcu----GCUGCGCUgGCUG- -5'
24848 5' -52.7 NC_005284.1 + 16680 0.68 0.751291
Target:  5'- -gAGCGUGaggccGGCGuCGGCGUGccGCUGACg -3'
miRNA:   3'- agUUGCAU-----UCGCuGCUGCGC--UGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 21317 0.68 0.748155
Target:  5'- gCAGCGccGGcCGACGGCGCguguaagcacugcgGAUCGACu -3'
miRNA:   3'- aGUUGCauUC-GCUGCUGCG--------------CUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 36523 0.68 0.740797
Target:  5'- -gGACGUucgacGGCGGCGGCuGC-ACCGAUg -3'
miRNA:   3'- agUUGCAu----UCGCUGCUG-CGcUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 42015 0.68 0.740797
Target:  5'- aCAGCGUAucuucGCGA--GCGCGuGCCGGCc -3'
miRNA:   3'- aGUUGCAUu----CGCUgcUGCGC-UGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 13981 0.69 0.719487
Target:  5'- cUCGAaa-AAGUGAUGGCGCGGCUGcGCg -3'
miRNA:   3'- -AGUUgcaUUCGCUGCUGCGCUGGC-UG- -5'
24848 5' -52.7 NC_005284.1 + 42756 0.69 0.719487
Target:  5'- aUCAuuACGUGGGCGAU--UGCGACC-ACg -3'
miRNA:   3'- -AGU--UGCAUUCGCUGcuGCGCUGGcUG- -5'
24848 5' -52.7 NC_005284.1 + 32924 0.69 0.719487
Target:  5'- gUCGACGUcugauAGGCGGCGGCaccaucGCccacGCCGGCg -3'
miRNA:   3'- -AGUUGCA-----UUCGCUGCUG------CGc---UGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 17342 0.69 0.708694
Target:  5'- aUCGcGCGUuacuGCGACGAacuCGUGuCCGACg -3'
miRNA:   3'- -AGU-UGCAuu--CGCUGCU---GCGCuGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 35782 0.69 0.707611
Target:  5'- gCGGCGUAgagcugaaacaGGCGGCGcuugaagccgugcAUGgGGCCGACa -3'
miRNA:   3'- aGUUGCAU-----------UCGCUGC-------------UGCgCUGGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.