miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24848 5' -52.7 NC_005284.1 + 9621 0.66 0.838822
Target:  5'- uUCAgaacGCGcAAGCGGCGgaggcuucaGCGCaGGCCGAg -3'
miRNA:   3'- -AGU----UGCaUUCGCUGC---------UGCG-CUGGCUg -5'
24848 5' -52.7 NC_005284.1 + 9904 0.73 0.490773
Target:  5'- ---uUGUGAGCGACGGCGUGcGCCGuauCg -3'
miRNA:   3'- aguuGCAUUCGCUGCUGCGC-UGGCu--G- -5'
24848 5' -52.7 NC_005284.1 + 10073 0.7 0.631645
Target:  5'- -gAGCGgaacgcGCGGCGAcCGCGACCGcgGCg -3'
miRNA:   3'- agUUGCauu---CGCUGCU-GCGCUGGC--UG- -5'
24848 5' -52.7 NC_005284.1 + 10125 0.67 0.80168
Target:  5'- -aAGCGc-GGCGACGGCGCaGA-CGGCg -3'
miRNA:   3'- agUUGCauUCGCUGCUGCG-CUgGCUG- -5'
24848 5' -52.7 NC_005284.1 + 10283 0.67 0.800712
Target:  5'- aCAACGcGAGCagcGCGACGUcgagucuGAUCGACa -3'
miRNA:   3'- aGUUGCaUUCGc--UGCUGCG-------CUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 11583 0.75 0.366204
Target:  5'- aUCGACGcggagcucGGCGACuACGCGGCCGAg -3'
miRNA:   3'- -AGUUGCau------UCGCUGcUGCGCUGGCUg -5'
24848 5' -52.7 NC_005284.1 + 11688 0.73 0.480463
Target:  5'- aUCAaucGCGUGAGCGACGAguuuCGCcgUCGACg -3'
miRNA:   3'- -AGU---UGCAUUCGCUGCU----GCGcuGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 12197 0.7 0.642735
Target:  5'- gCGACGggcgGGGCGGUGugGgGACCGGg -3'
miRNA:   3'- aGUUGCa---UUCGCUGCugCgCUGGCUg -5'
24848 5' -52.7 NC_005284.1 + 13981 0.69 0.719487
Target:  5'- cUCGAaa-AAGUGAUGGCGCGGCUGcGCg -3'
miRNA:   3'- -AGUUgcaUUCGCUGCUGCGCUGGC-UG- -5'
24848 5' -52.7 NC_005284.1 + 14179 0.69 0.686892
Target:  5'- uUCGGCGaGAGCGGCcccccaaaGGgGCGGCCGuCg -3'
miRNA:   3'- -AGUUGCaUUCGCUG--------CUgCGCUGGCuG- -5'
24848 5' -52.7 NC_005284.1 + 15351 0.72 0.511692
Target:  5'- cUCGGCGUGcaGGcCGAUGGCuCGAUCGGCa -3'
miRNA:   3'- -AGUUGCAU--UC-GCUGCUGcGCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 15594 0.73 0.480463
Target:  5'- cUCGACGUcGGCcGCGACGUGACguugcaggucggCGACg -3'
miRNA:   3'- -AGUUGCAuUCGcUGCUGCGCUG------------GCUG- -5'
24848 5' -52.7 NC_005284.1 + 15945 0.7 0.675905
Target:  5'- -uGACGUcGGCGcGCGACGcCGGCCcACg -3'
miRNA:   3'- agUUGCAuUCGC-UGCUGC-GCUGGcUG- -5'
24848 5' -52.7 NC_005284.1 + 16680 0.68 0.751291
Target:  5'- -gAGCGUGaggccGGCGuCGGCGUGccGCUGACg -3'
miRNA:   3'- agUUGCAU-----UCGCuGCUGCGC--UGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 17342 0.69 0.708694
Target:  5'- aUCGcGCGUuacuGCGACGAacuCGUGuCCGACg -3'
miRNA:   3'- -AGU-UGCAuu--CGCUGCU---GCGCuGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 17404 0.66 0.84758
Target:  5'- gCAACGcuacGGCGACGAcCGCGGCg--- -3'
miRNA:   3'- aGUUGCau--UCGCUGCU-GCGCUGgcug -5'
24848 5' -52.7 NC_005284.1 + 18129 0.74 0.440338
Target:  5'- -gAGCGUGcaggaaAGCGACGACGaCGGCCaGAUc -3'
miRNA:   3'- agUUGCAU------UCGCUGCUGC-GCUGG-CUG- -5'
24848 5' -52.7 NC_005284.1 + 18434 0.68 0.781987
Target:  5'- aCAuCGUc-GCGGcCGGCGCGAUCGAg -3'
miRNA:   3'- aGUuGCAuuCGCU-GCUGCGCUGGCUg -5'
24848 5' -52.7 NC_005284.1 + 18502 0.66 0.84758
Target:  5'- cUCGGCGUGacgucgauuccGGCGuACGGCGUcgauacgcaacuGACCGGg -3'
miRNA:   3'- -AGUUGCAU-----------UCGC-UGCUGCG------------CUGGCUg -5'
24848 5' -52.7 NC_005284.1 + 18685 0.7 0.631645
Target:  5'- aCGcCGaaucGCGACGACGCGACCa-- -3'
miRNA:   3'- aGUuGCauu-CGCUGCUGCGCUGGcug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.