miRNA display CGI


Results 61 - 80 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24848 5' -52.7 NC_005284.1 + 27636 0.66 0.861937
Target:  5'- -gAACGUGcGCGACGAcaaccucgggcaauCGCcgcuauacgGGCCGGCg -3'
miRNA:   3'- agUUGCAUuCGCUGCU--------------GCG---------CUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 29259 0.66 0.880235
Target:  5'- gCGACGc--GCGcACGACGaCGGCCG-Cu -3'
miRNA:   3'- aGUUGCauuCGC-UGCUGC-GCUGGCuG- -5'
24848 5' -52.7 NC_005284.1 + 29850 0.66 0.880235
Target:  5'- gUCGACGgucAAGcCGACGcaucuCGCGauggucggcGCCGGCg -3'
miRNA:   3'- -AGUUGCa--UUC-GCUGCu----GCGC---------UGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 31434 0.67 0.811262
Target:  5'- gCGACGUGcgccGCuGCGGCGCG-CCGGg -3'
miRNA:   3'- aGUUGCAUu---CGcUGCUGCGCuGGCUg -5'
24848 5' -52.7 NC_005284.1 + 32924 0.69 0.719487
Target:  5'- gUCGACGUcugauAGGCGGCGGCaccaucGCccacGCCGGCg -3'
miRNA:   3'- -AGUUGCA-----UUCGCUGCUG------CGc---UGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 33112 0.68 0.751291
Target:  5'- gUCGACGgcGGCcaccgcCGACGCGG-CGGCa -3'
miRNA:   3'- -AGUUGCauUCGcu----GCUGCGCUgGCUG- -5'
24848 5' -52.7 NC_005284.1 + 33166 0.66 0.856108
Target:  5'- cUCGGCGUcGAGCG-CGGCGCGcgaGAUc -3'
miRNA:   3'- -AGUUGCA-UUCGCuGCUGCGCuggCUG- -5'
24848 5' -52.7 NC_005284.1 + 33964 1.11 0.001482
Target:  5'- gUCAACGUAAGCGACGACGCGACCGACg -3'
miRNA:   3'- -AGUUGCAUUCGCUGCUGCGCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 35782 0.69 0.707611
Target:  5'- gCGGCGUAgagcugaaacaGGCGGCGcuugaagccgugcAUGgGGCCGACa -3'
miRNA:   3'- aGUUGCAU-----------UCGCUGC-------------UGCgCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 36294 0.67 0.791918
Target:  5'- aUCGACGUcacgccGAGCGcguucuCGGCGCGcACCcGCg -3'
miRNA:   3'- -AGUUGCA------UUCGCu-----GCUGCGC-UGGcUG- -5'
24848 5' -52.7 NC_005284.1 + 36523 0.68 0.740797
Target:  5'- -gGACGUucgacGGCGGCGGCuGC-ACCGAUg -3'
miRNA:   3'- agUUGCAu----UCGCUGCUG-CGcUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 36749 0.7 0.642735
Target:  5'- aUCGGCGUcgAAGCGcucgGCGAgCGUGACCGuguCg -3'
miRNA:   3'- -AGUUGCA--UUCGC----UGCU-GCGCUGGCu--G- -5'
24848 5' -52.7 NC_005284.1 + 37172 0.66 0.856108
Target:  5'- gUCGgauCGUuguAGCuGACGAgCGCGACCGu- -3'
miRNA:   3'- -AGUu--GCAu--UCG-CUGCU-GCGCUGGCug -5'
24848 5' -52.7 NC_005284.1 + 37817 0.7 0.675905
Target:  5'- uUCGGCGUGAuGCGGCGcACGCgGAUCa-- -3'
miRNA:   3'- -AGUUGCAUU-CGCUGC-UGCG-CUGGcug -5'
24848 5' -52.7 NC_005284.1 + 38097 0.66 0.838822
Target:  5'- -gGACGUcAGCGGC-ACGCcgacGCCGGCc -3'
miRNA:   3'- agUUGCAuUCGCUGcUGCGc---UGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 38837 0.75 0.366204
Target:  5'- -gAACGUGAGgcCGGCGuCGCGcGCCGACg -3'
miRNA:   3'- agUUGCAUUC--GCUGCuGCGC-UGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 39191 0.67 0.811262
Target:  5'- gCAACGUc----ACGuCGCGGCCGACg -3'
miRNA:   3'- aGUUGCAuucgcUGCuGCGCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 39294 0.66 0.864399
Target:  5'- gUCGG-GUAAcGCGACGcCGCGcUCGGCg -3'
miRNA:   3'- -AGUUgCAUU-CGCUGCuGCGCuGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 40271 0.66 0.838822
Target:  5'- gCAGCGUcGGCGAUGgcugcuGCGCGuCgGAUg -3'
miRNA:   3'- aGUUGCAuUCGCUGC------UGCGCuGgCUG- -5'
24848 5' -52.7 NC_005284.1 + 41592 0.7 0.642735
Target:  5'- aUCAACGUAcGCGcGCGAggcCGCG-CCGAg -3'
miRNA:   3'- -AGUUGCAUuCGC-UGCU---GCGCuGGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.