miRNA display CGI


Results 81 - 98 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24848 5' -52.7 NC_005284.1 + 42015 0.68 0.740797
Target:  5'- aCAGCGUAucuucGCGA--GCGCGuGCCGGCc -3'
miRNA:   3'- aGUUGCAUu----CGCUgcUGCGC-UGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 42756 0.69 0.719487
Target:  5'- aUCAuuACGUGGGCGAU--UGCGACC-ACg -3'
miRNA:   3'- -AGU--UGCAUUCGCUGcuGCGCUGGcUG- -5'
24848 5' -52.7 NC_005284.1 + 43562 0.66 0.84758
Target:  5'- aCAcACGUGcugucugugcAGCGGCaGAgGCGACCGuCu -3'
miRNA:   3'- aGU-UGCAU----------UCGCUG-CUgCGCUGGCuG- -5'
24848 5' -52.7 NC_005284.1 + 44885 0.66 0.872444
Target:  5'- -gAGCGcGAGCGACGcuucgGCGCG-CUGAg -3'
miRNA:   3'- agUUGCaUUCGCUGC-----UGCGCuGGCUg -5'
24848 5' -52.7 NC_005284.1 + 45061 0.7 0.675905
Target:  5'- -aAGCGUGGGCgGGCGAgCGCGGCU-ACg -3'
miRNA:   3'- agUUGCAUUCG-CUGCU-GCGCUGGcUG- -5'
24848 5' -52.7 NC_005284.1 + 45974 0.68 0.761661
Target:  5'- gCAGCGU-GGCGugGACgaguggauuGCGucauuGCCGGCu -3'
miRNA:   3'- aGUUGCAuUCGCugCUG---------CGC-----UGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 46539 0.69 0.697825
Target:  5'- cCAACGUcuugccGAGCcGCaGCGCGAgCGACa -3'
miRNA:   3'- aGUUGCA------UUCGcUGcUGCGCUgGCUG- -5'
24848 5' -52.7 NC_005284.1 + 46640 0.71 0.609476
Target:  5'- -gGACGUAguGGCGAC-ACGCGGCaaGACg -3'
miRNA:   3'- agUUGCAU--UCGCUGcUGCGCUGg-CUG- -5'
24848 5' -52.7 NC_005284.1 + 47766 0.66 0.863581
Target:  5'- gUCcGCGUAAGCagaucgaGGCGGCGCucgcggaggcGACgGGCg -3'
miRNA:   3'- -AGuUGCAUUCG-------CUGCUGCG----------CUGgCUG- -5'
24848 5' -52.7 NC_005284.1 + 47922 0.66 0.880235
Target:  5'- cCGACGgccaAGGUGAuccugaucuuucUGGCGCGguugGCCGACg -3'
miRNA:   3'- aGUUGCa---UUCGCU------------GCUGCGC----UGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 48817 0.67 0.791918
Target:  5'- gCAuCGUucGCGACGAuCG-GAUCGGCg -3'
miRNA:   3'- aGUuGCAuuCGCUGCU-GCgCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 48968 0.7 0.675905
Target:  5'- aUCGACG-AAGCGGUGcuGCGCGGCUgGACg -3'
miRNA:   3'- -AGUUGCaUUCGCUGC--UGCGCUGG-CUG- -5'
24848 5' -52.7 NC_005284.1 + 49607 0.67 0.80168
Target:  5'- uUCGGCGUcAAGUGGCGuuugagcugaucGCGCGucagcggcguuCCGACg -3'
miRNA:   3'- -AGUUGCA-UUCGCUGC------------UGCGCu----------GGCUG- -5'
24848 5' -52.7 NC_005284.1 + 49919 0.67 0.829843
Target:  5'- aUCGgauACG-AAGCGuCGAUGaCGACUGAUa -3'
miRNA:   3'- -AGU---UGCaUUCGCuGCUGC-GCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 50108 0.73 0.460169
Target:  5'- -gAACGUAAcGCGGCGAuCGCGcACgCGGCg -3'
miRNA:   3'- agUUGCAUU-CGCUGCU-GCGC-UG-GCUG- -5'
24848 5' -52.7 NC_005284.1 + 50257 0.66 0.850163
Target:  5'- gCGACGcugAAGCGucagaagGCGAUcgugaagcggaucaaGCGGCCGACc -3'
miRNA:   3'- aGUUGCa--UUCGC-------UGCUG---------------CGCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 50688 0.67 0.80168
Target:  5'- aUCGucUGUGAGCGGaaGCGCGAgaUCGACg -3'
miRNA:   3'- -AGUu-GCAUUCGCUgcUGCGCU--GGCUG- -5'
24848 5' -52.7 NC_005284.1 + 51393 0.68 0.781987
Target:  5'- uUCAGCG--GGCu-CGACGCGGCgGAa -3'
miRNA:   3'- -AGUUGCauUCGcuGCUGCGCUGgCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.