miRNA display CGI


Results 1 - 20 of 98 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24848 5' -52.7 NC_005284.1 + 41592 0.7 0.642735
Target:  5'- aUCAACGUAcGCGcGCGAggcCGCG-CCGAg -3'
miRNA:   3'- -AGUUGCAUuCGC-UGCU---GCGCuGGCUg -5'
24848 5' -52.7 NC_005284.1 + 4631 0.72 0.554557
Target:  5'- gCGACGgucGGCaGCGGCGUGAgCGGCa -3'
miRNA:   3'- aGUUGCau-UCGcUGCUGCGCUgGCUG- -5'
24848 5' -52.7 NC_005284.1 + 1126 0.71 0.609476
Target:  5'- gCAACccGGGCGACGGCGCGucGCCa-- -3'
miRNA:   3'- aGUUGcaUUCGCUGCUGCGC--UGGcug -5'
24848 5' -52.7 NC_005284.1 + 46640 0.71 0.609476
Target:  5'- -gGACGUAguGGCGAC-ACGCGGCaaGACg -3'
miRNA:   3'- agUUGCAU--UCGCUGcUGCGCUGg-CUG- -5'
24848 5' -52.7 NC_005284.1 + 10073 0.7 0.631645
Target:  5'- -gAGCGgaacgcGCGGCGAcCGCGACCGcgGCg -3'
miRNA:   3'- agUUGCauu---CGCUGCU-GCGCUGGC--UG- -5'
24848 5' -52.7 NC_005284.1 + 20617 0.7 0.631645
Target:  5'- gCAACGUAucuugGGgGACGcugcuauacaACgGCGGCCGACa -3'
miRNA:   3'- aGUUGCAU-----UCgCUGC----------UG-CGCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 18685 0.7 0.631645
Target:  5'- aCGcCGaaucGCGACGACGCGACCa-- -3'
miRNA:   3'- aGUuGCauu-CGCUGCUGCGCUGGcug -5'
24848 5' -52.7 NC_005284.1 + 12197 0.7 0.642735
Target:  5'- gCGACGggcgGGGCGGUGugGgGACCGGg -3'
miRNA:   3'- aGUUGCa---UUCGCUGCugCgCUGGCUg -5'
24848 5' -52.7 NC_005284.1 + 7992 0.7 0.642735
Target:  5'- uUCGcgcGCGcGAGUGACGACGCGcACaugcaGGCg -3'
miRNA:   3'- -AGU---UGCaUUCGCUGCUGCGC-UGg----CUG- -5'
24848 5' -52.7 NC_005284.1 + 21849 0.72 0.522289
Target:  5'- cCGGCGUGGGCGAUGGUGCcGCCGcCu -3'
miRNA:   3'- aGUUGCAUUCGCUGCUGCGcUGGCuG- -5'
24848 5' -52.7 NC_005284.1 + 15351 0.72 0.511692
Target:  5'- cUCGGCGUGcaGGcCGAUGGCuCGAUCGGCa -3'
miRNA:   3'- -AGUUGCAU--UC-GCUGCUGcGCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 15594 0.73 0.480463
Target:  5'- cUCGACGUcGGCcGCGACGUGACguugcaggucggCGACg -3'
miRNA:   3'- -AGUUGCAuUCGcUGCUGCGCUG------------GCUG- -5'
24848 5' -52.7 NC_005284.1 + 19398 0.76 0.340708
Target:  5'- aUCGACGaGGGCGGugcaGGCGUGAUCGGCg -3'
miRNA:   3'- -AGUUGCaUUCGCUg---CUGCGCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 11583 0.75 0.366204
Target:  5'- aUCGACGcggagcucGGCGACuACGCGGCCGAg -3'
miRNA:   3'- -AGUUGCau------UCGCUGcUGCGCUGGCUg -5'
24848 5' -52.7 NC_005284.1 + 26416 0.74 0.411529
Target:  5'- uUCGAgGUGGGCGACGACGaauugcucaGugCGAa -3'
miRNA:   3'- -AGUUgCAUUCGCUGCUGCg--------CugGCUg -5'
24848 5' -52.7 NC_005284.1 + 21911 0.74 0.421002
Target:  5'- uUCGGCGUcgccGGCGACGaucaGCGCGAgaUCGACa -3'
miRNA:   3'- -AGUUGCAu---UCGCUGC----UGCGCU--GGCUG- -5'
24848 5' -52.7 NC_005284.1 + 9491 0.74 0.430607
Target:  5'- gCGACGcAGGCGGCGACagcgugggucgGCGcCCGGCg -3'
miRNA:   3'- aGUUGCaUUCGCUGCUG-----------CGCuGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 18129 0.74 0.440338
Target:  5'- -gAGCGUGcaggaaAGCGACGACGaCGGCCaGAUc -3'
miRNA:   3'- agUUGCAU------UCGCUGCUGC-GCUGG-CUG- -5'
24848 5' -52.7 NC_005284.1 + 50108 0.73 0.460169
Target:  5'- -gAACGUAAcGCGGCGAuCGCGcACgCGGCg -3'
miRNA:   3'- agUUGCAUU-CGCUGCU-GCGC-UG-GCUG- -5'
24848 5' -52.7 NC_005284.1 + 11688 0.73 0.480463
Target:  5'- aUCAaucGCGUGAGCGACGAguuuCGCcgUCGACg -3'
miRNA:   3'- -AGU---UGCAUUCGCUGCU----GCGcuGGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.