miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24848 5' -52.7 NC_005284.1 + 29259 0.66 0.880235
Target:  5'- gCGACGc--GCGcACGACGaCGGCCG-Cu -3'
miRNA:   3'- aGUUGCauuCGC-UGCUGC-GCUGGCuG- -5'
24848 5' -52.7 NC_005284.1 + 48817 0.67 0.791918
Target:  5'- gCAuCGUucGCGACGAuCG-GAUCGGCg -3'
miRNA:   3'- aGUuGCAuuCGCUGCU-GCgCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 18434 0.68 0.781987
Target:  5'- aCAuCGUc-GCGGcCGGCGCGAUCGAg -3'
miRNA:   3'- aGUuGCAuuCGCU-GCUGCGCUGGCUg -5'
24848 5' -52.7 NC_005284.1 + 33964 1.11 0.001482
Target:  5'- gUCAACGUAAGCGACGACGCGACCGACg -3'
miRNA:   3'- -AGUUGCAUUCGCUGCUGCGCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 39294 0.66 0.864399
Target:  5'- gUCGG-GUAAcGCGACGcCGCGcUCGGCg -3'
miRNA:   3'- -AGUUgCAUU-CGCUGCuGCGCuGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 23111 0.66 0.864399
Target:  5'- aCuACGUGAGCGcUGGCGC-AgCGGCa -3'
miRNA:   3'- aGuUGCAUUCGCuGCUGCGcUgGCUG- -5'
24848 5' -52.7 NC_005284.1 + 33166 0.66 0.856108
Target:  5'- cUCGGCGUcGAGCG-CGGCGCGcgaGAUc -3'
miRNA:   3'- -AGUUGCA-UUCGCuGCUGCGCuggCUG- -5'
24848 5' -52.7 NC_005284.1 + 896 0.66 0.856108
Target:  5'- cCAAgGcAAGCGACGACgGCcGCCG-Ca -3'
miRNA:   3'- aGUUgCaUUCGCUGCUG-CGcUGGCuG- -5'
24848 5' -52.7 NC_005284.1 + 38097 0.66 0.838822
Target:  5'- -gGACGUcAGCGGC-ACGCcgacGCCGGCc -3'
miRNA:   3'- agUUGCAuUCGCUGcUGCGc---UGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 39191 0.67 0.811262
Target:  5'- gCAACGUc----ACGuCGCGGCCGACg -3'
miRNA:   3'- aGUUGCAuucgcUGCuGCGCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 40271 0.66 0.838822
Target:  5'- gCAGCGUcGGCGAUGgcugcuGCGCGuCgGAUg -3'
miRNA:   3'- aGUUGCAuUCGCUGC------UGCGCuGgCUG- -5'
24848 5' -52.7 NC_005284.1 + 17404 0.66 0.84758
Target:  5'- gCAACGcuacGGCGACGAcCGCGGCg--- -3'
miRNA:   3'- aGUUGCau--UCGCUGCU-GCGCUGgcug -5'
24848 5' -52.7 NC_005284.1 + 9196 0.66 0.880235
Target:  5'- gCAGCGUGuaugugaucaGGCGuCGauagccgaguGCGCGGgCGACg -3'
miRNA:   3'- aGUUGCAU----------UCGCuGC----------UGCGCUgGCUG- -5'
24848 5' -52.7 NC_005284.1 + 20123 0.66 0.838822
Target:  5'- gUCAACGUGAGUGAguaCGucaucacUGCGGCaGACg -3'
miRNA:   3'- -AGUUGCAUUCGCU---GCu------GCGCUGgCUG- -5'
24848 5' -52.7 NC_005284.1 + 44885 0.66 0.872444
Target:  5'- -gAGCGcGAGCGACGcuucgGCGCG-CUGAg -3'
miRNA:   3'- agUUGCaUUCGCUGC-----UGCGCuGGCUg -5'
24848 5' -52.7 NC_005284.1 + 43562 0.66 0.84758
Target:  5'- aCAcACGUGcugucugugcAGCGGCaGAgGCGACCGuCu -3'
miRNA:   3'- aGU-UGCAU----------UCGCUG-CUgCGCUGGCuG- -5'
24848 5' -52.7 NC_005284.1 + 8340 0.67 0.820653
Target:  5'- cUCGGCGgcauuCGGCGACGgCGAUCGGu -3'
miRNA:   3'- -AGUUGCauuc-GCUGCUGC-GCUGGCUg -5'
24848 5' -52.7 NC_005284.1 + 36294 0.67 0.791918
Target:  5'- aUCGACGUcacgccGAGCGcguucuCGGCGCGcACCcGCg -3'
miRNA:   3'- -AGUUGCA------UUCGCu-----GCUGCGC-UGGcUG- -5'
24848 5' -52.7 NC_005284.1 + 7809 0.66 0.872444
Target:  5'- gCAGCuugGAGCGguACGACGCcauuuCCGACc -3'
miRNA:   3'- aGUUGca-UUCGC--UGCUGCGcu---GGCUG- -5'
24848 5' -52.7 NC_005284.1 + 37172 0.66 0.856108
Target:  5'- gUCGgauCGUuguAGCuGACGAgCGCGACCGu- -3'
miRNA:   3'- -AGUu--GCAu--UCG-CUGCU-GCGCUGGCug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.