miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24848 5' -52.7 NC_005284.1 + 36294 0.67 0.791918
Target:  5'- aUCGACGUcacgccGAGCGcguucuCGGCGCGcACCcGCg -3'
miRNA:   3'- -AGUUGCA------UUCGCu-----GCUGCGC-UGGcUG- -5'
24848 5' -52.7 NC_005284.1 + 36749 0.7 0.642735
Target:  5'- aUCGGCGUcgAAGCGcucgGCGAgCGUGACCGuguCg -3'
miRNA:   3'- -AGUUGCA--UUCGC----UGCU-GCGCUGGCu--G- -5'
24848 5' -52.7 NC_005284.1 + 48817 0.67 0.791918
Target:  5'- gCAuCGUucGCGACGAuCG-GAUCGGCg -3'
miRNA:   3'- aGUuGCAuuCGCUGCU-GCgCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 44885 0.66 0.872444
Target:  5'- -gAGCGcGAGCGACGcuucgGCGCG-CUGAg -3'
miRNA:   3'- agUUGCaUUCGCUGC-----UGCGCuGGCUg -5'
24848 5' -52.7 NC_005284.1 + 23577 0.7 0.675905
Target:  5'- gCAACGUcgcGGCGAUGcuACGCGAgaucggaaucgaCCGACu -3'
miRNA:   3'- aGUUGCAu--UCGCUGC--UGCGCU------------GGCUG- -5'
24848 5' -52.7 NC_005284.1 + 32924 0.69 0.719487
Target:  5'- gUCGACGUcugauAGGCGGCGGCaccaucGCccacGCCGGCg -3'
miRNA:   3'- -AGUUGCA-----UUCGCUGCUG------CGc---UGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 9904 0.73 0.490773
Target:  5'- ---uUGUGAGCGACGGCGUGcGCCGuauCg -3'
miRNA:   3'- aguuGCAUUCGCUGCUGCGC-UGGCu--G- -5'
24848 5' -52.7 NC_005284.1 + 38837 0.75 0.366204
Target:  5'- -gAACGUGAGgcCGGCGuCGCGcGCCGACg -3'
miRNA:   3'- agUUGCAUUC--GCUGCuGCGC-UGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 9196 0.66 0.880235
Target:  5'- gCAGCGUGuaugugaucaGGCGuCGauagccgaguGCGCGGgCGACg -3'
miRNA:   3'- aGUUGCAU----------UCGCuGC----------UGCGCUgGCUG- -5'
24848 5' -52.7 NC_005284.1 + 29259 0.66 0.880235
Target:  5'- gCGACGc--GCGcACGACGaCGGCCG-Cu -3'
miRNA:   3'- aGUUGCauuCGC-UGCUGC-GCUGGCuG- -5'
24848 5' -52.7 NC_005284.1 + 39294 0.66 0.864399
Target:  5'- gUCGG-GUAAcGCGACGcCGCGcUCGGCg -3'
miRNA:   3'- -AGUUgCAUU-CGCUGCuGCGCuGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 33166 0.66 0.856108
Target:  5'- cUCGGCGUcGAGCG-CGGCGCGcgaGAUc -3'
miRNA:   3'- -AGUUGCA-UUCGCuGCUGCGCuggCUG- -5'
24848 5' -52.7 NC_005284.1 + 7809 0.66 0.872444
Target:  5'- gCAGCuugGAGCGguACGACGCcauuuCCGACc -3'
miRNA:   3'- aGUUGca-UUCGC--UGCUGCGcu---GGCUG- -5'
24848 5' -52.7 NC_005284.1 + 18129 0.74 0.440338
Target:  5'- -gAGCGUGcaggaaAGCGACGACGaCGGCCaGAUc -3'
miRNA:   3'- agUUGCAU------UCGCUGCUGC-GCUGG-CUG- -5'
24848 5' -52.7 NC_005284.1 + 35782 0.69 0.707611
Target:  5'- gCGGCGUAgagcugaaacaGGCGGCGcuugaagccgugcAUGgGGCCGACa -3'
miRNA:   3'- aGUUGCAU-----------UCGCUGC-------------UGCgCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 21306 0.69 0.707611
Target:  5'- aCAACGgcgAGGCGguucaauGCGG-GCGACUGGCg -3'
miRNA:   3'- aGUUGCa--UUCGC-------UGCUgCGCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 1368 0.69 0.697825
Target:  5'- aUCGACGaAGGgGACGAUugGACCGAUc -3'
miRNA:   3'- -AGUUGCaUUCgCUGCUGcgCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 14179 0.69 0.686892
Target:  5'- uUCGGCGaGAGCGGCcccccaaaGGgGCGGCCGuCg -3'
miRNA:   3'- -AGUUGCaUUCGCUG--------CUgCGCUGGCuG- -5'
24848 5' -52.7 NC_005284.1 + 1126 0.71 0.609476
Target:  5'- gCAACccGGGCGACGGCGCGucGCCa-- -3'
miRNA:   3'- aGUUGcaUUCGCUGCUGCGC--UGGcug -5'
24848 5' -52.7 NC_005284.1 + 46640 0.71 0.609476
Target:  5'- -gGACGUAguGGCGAC-ACGCGGCaaGACg -3'
miRNA:   3'- agUUGCAU--UCGCUGcUGCGCUGg-CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.