miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24848 5' -52.7 NC_005284.1 + 4902 0.66 0.838822
Target:  5'- --cGCGUcAGauucuCGACGAUGCG-CCGGCa -3'
miRNA:   3'- aguUGCAuUC-----GCUGCUGCGCuGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 24262 0.66 0.872444
Target:  5'- gUCAGCGUaAAGCGcgaguugaacAUGACGUuuggugauaGGCCGAUu -3'
miRNA:   3'- -AGUUGCA-UUCGC----------UGCUGCG---------CUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 7697 0.66 0.872444
Target:  5'- aCAGCGUGcGCGugaGCGGUGCG-CCGAa -3'
miRNA:   3'- aGUUGCAUuCGC---UGCUGCGCuGGCUg -5'
24848 5' -52.7 NC_005284.1 + 23099 0.67 0.829843
Target:  5'- --cAUGUGggGGCGgaaACGACG-GGCCGACa -3'
miRNA:   3'- aguUGCAU--UCGC---UGCUGCgCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 27636 0.66 0.861937
Target:  5'- -gAACGUGcGCGACGAcaaccucgggcaauCGCcgcuauacgGGCCGGCg -3'
miRNA:   3'- agUUGCAUuCGCUGCU--------------GCG---------CUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 50257 0.66 0.850163
Target:  5'- gCGACGcugAAGCGucagaagGCGAUcgugaagcggaucaaGCGGCCGACc -3'
miRNA:   3'- aGUUGCa--UUCGC-------UGCUG---------------CGCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 47766 0.66 0.863581
Target:  5'- gUCcGCGUAAGCagaucgaGGCGGCGCucgcggaggcGACgGGCg -3'
miRNA:   3'- -AGuUGCAUUCG-------CUGCUGCG----------CUGgCUG- -5'
24848 5' -52.7 NC_005284.1 + 45061 0.7 0.675905
Target:  5'- -aAGCGUGGGCgGGCGAgCGCGGCU-ACg -3'
miRNA:   3'- agUUGCAUUCG-CUGCU-GCGCUGGcUG- -5'
24848 5' -52.7 NC_005284.1 + 18129 0.74 0.440338
Target:  5'- -gAGCGUGcaggaaAGCGACGACGaCGGCCaGAUc -3'
miRNA:   3'- agUUGCAU------UCGCUGCUGC-GCUGG-CUG- -5'
24848 5' -52.7 NC_005284.1 + 21849 0.72 0.522289
Target:  5'- cCGGCGUGGGCGAUGGUGCcGCCGcCu -3'
miRNA:   3'- aGUUGCAUUCGCUGCUGCGcUGGCuG- -5'
24848 5' -52.7 NC_005284.1 + 4631 0.72 0.554557
Target:  5'- gCGACGgucGGCaGCGGCGUGAgCGGCa -3'
miRNA:   3'- aGUUGCau-UCGcUGCUGCGCUgGCUG- -5'
24848 5' -52.7 NC_005284.1 + 1126 0.71 0.609476
Target:  5'- gCAACccGGGCGACGGCGCGucGCCa-- -3'
miRNA:   3'- aGUUGcaUUCGCUGCUGCGC--UGGcug -5'
24848 5' -52.7 NC_005284.1 + 46640 0.71 0.609476
Target:  5'- -gGACGUAguGGCGAC-ACGCGGCaaGACg -3'
miRNA:   3'- agUUGCAU--UCGCUGcUGCGCUGg-CUG- -5'
24848 5' -52.7 NC_005284.1 + 18961 0.7 0.675905
Target:  5'- cCAugGccGGCGACGcaacgaucuACGCGGgCGACg -3'
miRNA:   3'- aGUugCauUCGCUGC---------UGCGCUgGCUG- -5'
24848 5' -52.7 NC_005284.1 + 48968 0.7 0.675905
Target:  5'- aUCGACG-AAGCGGUGcuGCGCGGCUgGACg -3'
miRNA:   3'- -AGUUGCaUUCGCUGC--UGCGCUGG-CUG- -5'
24848 5' -52.7 NC_005284.1 + 14179 0.69 0.686892
Target:  5'- uUCGGCGaGAGCGGCcccccaaaGGgGCGGCCGuCg -3'
miRNA:   3'- -AGUUGCaUUCGCUG--------CUgCGCUGGCuG- -5'
24848 5' -52.7 NC_005284.1 + 1368 0.69 0.697825
Target:  5'- aUCGACGaAGGgGACGAUugGACCGAUc -3'
miRNA:   3'- -AGUUGCaUUCgCUGCUGcgCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 21306 0.69 0.707611
Target:  5'- aCAACGgcgAGGCGguucaauGCGG-GCGACUGGCg -3'
miRNA:   3'- aGUUGCa--UUCGC-------UGCUgCGCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 35782 0.69 0.707611
Target:  5'- gCGGCGUAgagcugaaacaGGCGGCGcuugaagccgugcAUGgGGCCGACa -3'
miRNA:   3'- aGUUGCAU-----------UCGCUGC-------------UGCgCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 17342 0.69 0.708694
Target:  5'- aUCGcGCGUuacuGCGACGAacuCGUGuCCGACg -3'
miRNA:   3'- -AGU-UGCAuu--CGCUGCU---GCGCuGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.