miRNA display CGI


Results 61 - 80 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24848 5' -52.7 NC_005284.1 + 15594 0.73 0.480463
Target:  5'- cUCGACGUcGGCcGCGACGUGACguugcaggucggCGACg -3'
miRNA:   3'- -AGUUGCAuUCGcUGCUGCGCUG------------GCUG- -5'
24848 5' -52.7 NC_005284.1 + 18129 0.74 0.440338
Target:  5'- -gAGCGUGcaggaaAGCGACGACGaCGGCCaGAUc -3'
miRNA:   3'- agUUGCAU------UCGCUGCUGC-GCUGG-CUG- -5'
24848 5' -52.7 NC_005284.1 + 9491 0.74 0.430607
Target:  5'- gCGACGcAGGCGGCGACagcgugggucgGCGcCCGGCg -3'
miRNA:   3'- aGUUGCaUUCGCUGCUG-----------CGCuGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 21911 0.74 0.421002
Target:  5'- uUCGGCGUcgccGGCGACGaucaGCGCGAgaUCGACa -3'
miRNA:   3'- -AGUUGCAu---UCGCUGC----UGCGCU--GGCUG- -5'
24848 5' -52.7 NC_005284.1 + 48968 0.7 0.675905
Target:  5'- aUCGACG-AAGCGGUGcuGCGCGGCUgGACg -3'
miRNA:   3'- -AGUUGCaUUCGCUGC--UGCGCUGG-CUG- -5'
24848 5' -52.7 NC_005284.1 + 14179 0.69 0.686892
Target:  5'- uUCGGCGaGAGCGGCcccccaaaGGgGCGGCCGuCg -3'
miRNA:   3'- -AGUUGCaUUCGCUG--------CUgCGCUGGCuG- -5'
24848 5' -52.7 NC_005284.1 + 31434 0.67 0.811262
Target:  5'- gCGACGUGcgccGCuGCGGCGCG-CCGGg -3'
miRNA:   3'- aGUUGCAUu---CGcUGCUGCGCuGGCUg -5'
24848 5' -52.7 NC_005284.1 + 7336 0.67 0.811262
Target:  5'- gUCGAgGUGucgaaaguuGCGucgaccgaucuCGACGCGGCCGAUc -3'
miRNA:   3'- -AGUUgCAUu--------CGCu----------GCUGCGCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 50688 0.67 0.80168
Target:  5'- aUCGucUGUGAGCGGaaGCGCGAgaUCGACg -3'
miRNA:   3'- -AGUu-GCAUUCGCUgcUGCGCU--GGCUG- -5'
24848 5' -52.7 NC_005284.1 + 49607 0.67 0.80168
Target:  5'- uUCGGCGUcAAGUGGCGuuugagcugaucGCGCGucagcggcguuCCGACg -3'
miRNA:   3'- -AGUUGCA-UUCGCUGC------------UGCGCu----------GGCUG- -5'
24848 5' -52.7 NC_005284.1 + 10125 0.67 0.80168
Target:  5'- -aAGCGc-GGCGACGGCGCaGA-CGGCg -3'
miRNA:   3'- agUUGCauUCGCUGCUGCG-CUgGCUG- -5'
24848 5' -52.7 NC_005284.1 + 10283 0.67 0.800712
Target:  5'- aCAACGcGAGCagcGCGACGUcgagucuGAUCGACa -3'
miRNA:   3'- aGUUGCaUUCGc--UGCUGCG-------CUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 26391 0.67 0.791918
Target:  5'- aUCAACGgcAGCGugGcUGCG-CCGc- -3'
miRNA:   3'- -AGUUGCauUCGCugCuGCGCuGGCug -5'
24848 5' -52.7 NC_005284.1 + 5977 0.67 0.791918
Target:  5'- cCGAuCGUc-GCGACGAUGCGAUucgggCGGCa -3'
miRNA:   3'- aGUU-GCAuuCGCUGCUGCGCUG-----GCUG- -5'
24848 5' -52.7 NC_005284.1 + 51393 0.68 0.781987
Target:  5'- uUCAGCG--GGCu-CGACGCGGCgGAa -3'
miRNA:   3'- -AGUUGCauUCGcuGCUGCGCUGgCUg -5'
24848 5' -52.7 NC_005284.1 + 8565 0.68 0.781987
Target:  5'- gUCAGCGUua-CGGCGAauaCGACCGAa -3'
miRNA:   3'- -AGUUGCAuucGCUGCUgc-GCUGGCUg -5'
24848 5' -52.7 NC_005284.1 + 17342 0.69 0.708694
Target:  5'- aUCGcGCGUuacuGCGACGAacuCGUGuCCGACg -3'
miRNA:   3'- -AGU-UGCAuu--CGCUGCU---GCGCuGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 35782 0.69 0.707611
Target:  5'- gCGGCGUAgagcugaaacaGGCGGCGcuugaagccgugcAUGgGGCCGACa -3'
miRNA:   3'- aGUUGCAU-----------UCGCUGC-------------UGCgCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 21306 0.69 0.707611
Target:  5'- aCAACGgcgAGGCGguucaauGCGG-GCGACUGGCg -3'
miRNA:   3'- aGUUGCa--UUCGC-------UGCUgCGCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 1368 0.69 0.697825
Target:  5'- aUCGACGaAGGgGACGAUugGACCGAUc -3'
miRNA:   3'- -AGUUGCaUUCgCUGCUGcgCUGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.