miRNA display CGI


Results 81 - 98 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24848 5' -52.7 NC_005284.1 + 49607 0.67 0.80168
Target:  5'- uUCGGCGUcAAGUGGCGuuugagcugaucGCGCGucagcggcguuCCGACg -3'
miRNA:   3'- -AGUUGCA-UUCGCUGC------------UGCGCu----------GGCUG- -5'
24848 5' -52.7 NC_005284.1 + 50688 0.67 0.80168
Target:  5'- aUCGucUGUGAGCGGaaGCGCGAgaUCGACg -3'
miRNA:   3'- -AGUu-GCAUUCGCUgcUGCGCU--GGCUG- -5'
24848 5' -52.7 NC_005284.1 + 7336 0.67 0.811262
Target:  5'- gUCGAgGUGucgaaaguuGCGucgaccgaucuCGACGCGGCCGAUc -3'
miRNA:   3'- -AGUUgCAUu--------CGCu----------GCUGCGCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 31434 0.67 0.811262
Target:  5'- gCGACGUGcgccGCuGCGGCGCG-CCGGg -3'
miRNA:   3'- aGUUGCAUu---CGcUGCUGCGCuGGCUg -5'
24848 5' -52.7 NC_005284.1 + 7954 0.67 0.820653
Target:  5'- gUAACGgagGGCGACGACGaaa-CGGCg -3'
miRNA:   3'- aGUUGCau-UCGCUGCUGCgcugGCUG- -5'
24848 5' -52.7 NC_005284.1 + 8565 0.68 0.781987
Target:  5'- gUCAGCGUua-CGGCGAauaCGACCGAa -3'
miRNA:   3'- -AGUUGCAuucGCUGCUgc-GCUGGCUg -5'
24848 5' -52.7 NC_005284.1 + 7857 0.68 0.77088
Target:  5'- -gAGCGUAccggaauggAGUGGCGaaaagaucgcaguGCGCGAgCCGACg -3'
miRNA:   3'- agUUGCAU---------UCGCUGC-------------UGCGCU-GGCUG- -5'
24848 5' -52.7 NC_005284.1 + 14179 0.69 0.686892
Target:  5'- uUCGGCGaGAGCGGCcccccaaaGGgGCGGCCGuCg -3'
miRNA:   3'- -AGUUGCaUUCGCUG--------CUgCGCUGGCuG- -5'
24848 5' -52.7 NC_005284.1 + 1368 0.69 0.697825
Target:  5'- aUCGACGaAGGgGACGAUugGACCGAUc -3'
miRNA:   3'- -AGUUGCaUUCgCUGCUGcgCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 21306 0.69 0.707611
Target:  5'- aCAACGgcgAGGCGguucaauGCGG-GCGACUGGCg -3'
miRNA:   3'- aGUUGCa--UUCGC-------UGCUgCGCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 35782 0.69 0.707611
Target:  5'- gCGGCGUAgagcugaaacaGGCGGCGcuugaagccgugcAUGgGGCCGACa -3'
miRNA:   3'- aGUUGCAU-----------UCGCUGC-------------UGCgCUGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 17342 0.69 0.708694
Target:  5'- aUCGcGCGUuacuGCGACGAacuCGUGuCCGACg -3'
miRNA:   3'- -AGU-UGCAuu--CGCUGCU---GCGCuGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 13981 0.69 0.719487
Target:  5'- cUCGAaa-AAGUGAUGGCGCGGCUGcGCg -3'
miRNA:   3'- -AGUUgcaUUCGCUGCUGCGCUGGC-UG- -5'
24848 5' -52.7 NC_005284.1 + 42756 0.69 0.719487
Target:  5'- aUCAuuACGUGGGCGAU--UGCGACC-ACg -3'
miRNA:   3'- -AGU--UGCAUUCGCUGcuGCGCUGGcUG- -5'
24848 5' -52.7 NC_005284.1 + 42015 0.68 0.740797
Target:  5'- aCAGCGUAucuucGCGA--GCGCGuGCCGGCc -3'
miRNA:   3'- aGUUGCAUu----CGCUgcUGCGC-UGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 16680 0.68 0.751291
Target:  5'- -gAGCGUGaggccGGCGuCGGCGUGccGCUGACg -3'
miRNA:   3'- agUUGCAU-----UCGCuGCUGCGC--UGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 45974 0.68 0.761661
Target:  5'- gCAGCGU-GGCGugGACgaguggauuGCGucauuGCCGGCu -3'
miRNA:   3'- aGUUGCAuUCGCugCUG---------CGC-----UGGCUG- -5'
24848 5' -52.7 NC_005284.1 + 49919 0.67 0.829843
Target:  5'- aUCGgauACG-AAGCGuCGAUGaCGACUGAUa -3'
miRNA:   3'- -AGU---UGCaUUCGCuGCUGC-GCUGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.