miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24849 3' -60.6 NC_005284.1 + 42102 0.66 0.465763
Target:  5'- --aGGCcgUCCGCGgcccGCUgGGUGuAGCCGu -3'
miRNA:   3'- uggCCG--AGGCGCa---CGAgCUAC-UCGGC- -5'
24849 3' -60.6 NC_005284.1 + 671 0.66 0.445695
Target:  5'- uACCGGCUCCgaguuggcgauugGCGUGUguuguacgaaaUCGAaGAugGCCGc -3'
miRNA:   3'- -UGGCCGAGG-------------CGCACG-----------AGCUaCU--CGGC- -5'
24849 3' -60.6 NC_005284.1 + 18772 0.66 0.409753
Target:  5'- cGCCaGUaCCGCccGUGCUCgugcGAUGAGUCGg -3'
miRNA:   3'- -UGGcCGaGGCG--CACGAG----CUACUCGGC- -5'
24849 3' -60.6 NC_005284.1 + 24123 0.67 0.392035
Target:  5'- cGCCGGC-CgGC-UGCUCGAcG-GCCGc -3'
miRNA:   3'- -UGGCCGaGgCGcACGAGCUaCuCGGC- -5'
24849 3' -60.6 NC_005284.1 + 24951 0.67 0.391162
Target:  5'- cGCCGaucaugcGCUCCGCGU-CUCccuugGAGCCGc -3'
miRNA:   3'- -UGGC-------CGAGGCGCAcGAGcua--CUCGGC- -5'
24849 3' -60.6 NC_005284.1 + 33256 0.67 0.383365
Target:  5'- cACCGcCUCCGCaGUGggCGAUGcuGCCGc -3'
miRNA:   3'- -UGGCcGAGGCG-CACgaGCUACu-CGGC- -5'
24849 3' -60.6 NC_005284.1 + 39816 0.67 0.374823
Target:  5'- aACCGGg-CCGCGUGCcgcaUUGcAUGGGCgCGg -3'
miRNA:   3'- -UGGCCgaGGCGCACG----AGC-UACUCG-GC- -5'
24849 3' -60.6 NC_005284.1 + 16688 0.68 0.349981
Target:  5'- gGCCGGCgUCgGCGUGC-CGcUGAcguccgacgcGCCGu -3'
miRNA:   3'- -UGGCCG-AGgCGCACGaGCuACU----------CGGC- -5'
24849 3' -60.6 NC_005284.1 + 53952 0.68 0.318718
Target:  5'- aACCGGCgcuugCCgGUGcGCUUGuUGAGCCa -3'
miRNA:   3'- -UGGCCGa----GG-CGCaCGAGCuACUCGGc -5'
24849 3' -60.6 NC_005284.1 + 16758 0.68 0.318718
Target:  5'- -gCGGUg-CGCGUGCgcuUCGGUGuGCCGg -3'
miRNA:   3'- ugGCCGagGCGCACG---AGCUACuCGGC- -5'
24849 3' -60.6 NC_005284.1 + 34056 0.7 0.262611
Target:  5'- cGCUGGCUUCGCG-GCUCGGaaauacgccUcGGCCGc -3'
miRNA:   3'- -UGGCCGAGGCGCaCGAGCU---------AcUCGGC- -5'
24849 3' -60.6 NC_005284.1 + 33969 0.7 0.244348
Target:  5'- gGCCGGCgcugCUGCGggcUGCUCGAcagggggugcggcgaGGGCCGa -3'
miRNA:   3'- -UGGCCGa---GGCGC---ACGAGCUa--------------CUCGGC- -5'
24849 3' -60.6 NC_005284.1 + 46901 0.71 0.214802
Target:  5'- cCCGGCUUCGCaUGCUgGcuaAUGGGCUGg -3'
miRNA:   3'- uGGCCGAGGCGcACGAgC---UACUCGGC- -5'
24849 3' -60.6 NC_005284.1 + 33603 1.07 0.00041
Target:  5'- gACCGGCUCCGCGUGCUCGAUGAGCCGu -3'
miRNA:   3'- -UGGCCGAGGCGCACGAGCUACUCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.