Results 1 - 20 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24849 | 5' | -53.1 | NC_005284.1 | + | 9144 | 0.66 | 0.849988 |
Target: 5'- uCGCGGaugcUAUCGCGCGcGGcaugggcaagaguucGGCGCa -3' miRNA: 3'- -GCGCCguaaGUAGUGCGCaCU---------------UCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 41815 | 0.66 | 0.849988 |
Target: 5'- gGUGGCA-UCGUgaUugGCGgaauugcggacaaagUGggGCGCc -3' miRNA: 3'- gCGCCGUaAGUA--GugCGC---------------ACuuCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 45201 | 0.66 | 0.84652 |
Target: 5'- cCGCGGCAgcgCgAUCGCccuGCGcuuUGGcgAGCGCu -3' miRNA: 3'- -GCGCCGUaa-G-UAGUG---CGC---ACU--UCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 44128 | 0.66 | 0.84652 |
Target: 5'- cCGCGGCgcgcaccaGUUCcUCGCGC----AGCGCu -3' miRNA: 3'- -GCGCCG--------UAAGuAGUGCGcacuUCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 23090 | 0.66 | 0.84652 |
Target: 5'- uGCGGCua-CGUaCGCGCuUGAacuacgugAGCGCu -3' miRNA: 3'- gCGCCGuaaGUA-GUGCGcACU--------UCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 2545 | 0.66 | 0.84652 |
Target: 5'- gGCGGUAUUacUAUCACaGgGUGAAuGaCGCc -3' miRNA: 3'- gCGCCGUAA--GUAGUG-CgCACUU-C-GCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 44936 | 0.66 | 0.83769 |
Target: 5'- uCGCGaGCGaUgAUCGcCGCGUaGGGCGUg -3' miRNA: 3'- -GCGC-CGUaAgUAGU-GCGCAcUUCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 14978 | 0.66 | 0.83769 |
Target: 5'- gGCGGCuuccugugCGaCACgaugGCGUGAcGCGCa -3' miRNA: 3'- gCGCCGuaa-----GUaGUG----CGCACUuCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 50115 | 0.66 | 0.83769 |
Target: 5'- aCGCGGCGaUCGcgCACGCGgcguuCGCc -3' miRNA: 3'- -GCGCCGUaAGUa-GUGCGCacuucGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 19602 | 0.66 | 0.83769 |
Target: 5'- aGCGGCAUUCGgacggUUAuCGaCGgaaacGGAGUGCg -3' miRNA: 3'- gCGCCGUAAGU-----AGU-GC-GCa----CUUCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 12231 | 0.66 | 0.828638 |
Target: 5'- uGCGGCAUUCAaCAUaGCGaacAGCGg -3' miRNA: 3'- gCGCCGUAAGUaGUG-CGCacuUCGCg -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 37184 | 0.66 | 0.828638 |
Target: 5'- gGC-GCGUUC-UCACGCGgGAucGCGUa -3' miRNA: 3'- gCGcCGUAAGuAGUGCGCaCUu-CGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 19807 | 0.66 | 0.828638 |
Target: 5'- gGCGGCAgaucUC-UCGCGCGggGAAcCGUu -3' miRNA: 3'- gCGCCGUa---AGuAGUGCGCa-CUUcGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 42116 | 0.66 | 0.828638 |
Target: 5'- uGCGGUGUUUAUC----GUGAAGUGCc -3' miRNA: 3'- gCGCCGUAAGUAGugcgCACUUCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 5519 | 0.66 | 0.819374 |
Target: 5'- aGCGcGC-UUCGUCACGuCGccuccUGAucGCGCg -3' miRNA: 3'- gCGC-CGuAAGUAGUGC-GC-----ACUu-CGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 9084 | 0.66 | 0.819374 |
Target: 5'- uCGCGGCGgggcaGUUGCGCGgucaggaucUGAauAGCGUg -3' miRNA: 3'- -GCGCCGUaag--UAGUGCGC---------ACU--UCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 12637 | 0.66 | 0.819374 |
Target: 5'- gGCGGCGauaCGaCGCuGCGUGu-GCGCa -3' miRNA: 3'- gCGCCGUaa-GUaGUG-CGCACuuCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 16124 | 0.66 | 0.819374 |
Target: 5'- gCGCGGUggcgacGUUCGguuUCGCGCagccGUGggGCa- -3' miRNA: 3'- -GCGCCG------UAAGU---AGUGCG----CACuuCGcg -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 33922 | 0.66 | 0.819374 |
Target: 5'- aGUGGCcUUCAgagaUCAgggauuUGCG-GAAGCGCc -3' miRNA: 3'- gCGCCGuAAGU----AGU------GCGCaCUUCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 17422 | 0.66 | 0.819374 |
Target: 5'- cCGCGGCGUcaaCGUCGaa-GUGAaggggcccgGGCGCu -3' miRNA: 3'- -GCGCCGUAa--GUAGUgcgCACU---------UCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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