miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24849 5' -53.1 NC_005284.1 + 19602 0.66 0.83769
Target:  5'- aGCGGCAUUCGgacggUUAuCGaCGgaaacGGAGUGCg -3'
miRNA:   3'- gCGCCGUAAGU-----AGU-GC-GCa----CUUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 23090 0.66 0.84652
Target:  5'- uGCGGCua-CGUaCGCGCuUGAacuacgugAGCGCu -3'
miRNA:   3'- gCGCCGuaaGUA-GUGCGcACU--------UCGCG- -5'
24849 5' -53.1 NC_005284.1 + 45201 0.66 0.84652
Target:  5'- cCGCGGCAgcgCgAUCGCccuGCGcuuUGGcgAGCGCu -3'
miRNA:   3'- -GCGCCGUaa-G-UAGUG---CGC---ACU--UCGCG- -5'
24849 5' -53.1 NC_005284.1 + 14978 0.66 0.83769
Target:  5'- gGCGGCuuccugugCGaCACgaugGCGUGAcGCGCa -3'
miRNA:   3'- gCGCCGuaa-----GUaGUG----CGCACUuCGCG- -5'
24849 5' -53.1 NC_005284.1 + 41815 0.66 0.849988
Target:  5'- gGUGGCA-UCGUgaUugGCGgaauugcggacaaagUGggGCGCc -3'
miRNA:   3'- gCGCCGUaAGUA--GugCGC---------------ACuuCGCG- -5'
24849 5' -53.1 NC_005284.1 + 50115 0.66 0.83769
Target:  5'- aCGCGGCGaUCGcgCACGCGgcguuCGCc -3'
miRNA:   3'- -GCGCCGUaAGUa-GUGCGCacuucGCG- -5'
24849 5' -53.1 NC_005284.1 + 9144 0.66 0.849988
Target:  5'- uCGCGGaugcUAUCGCGCGcGGcaugggcaagaguucGGCGCa -3'
miRNA:   3'- -GCGCCguaaGUAGUGCGCaCU---------------UCGCG- -5'
24849 5' -53.1 NC_005284.1 + 24235 0.66 0.80895
Target:  5'- cCGCGGUgugGUgggauuuacccgaUCGUCA-GCGUaAAGCGCg -3'
miRNA:   3'- -GCGCCG---UA-------------AGUAGUgCGCAcUUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 22585 0.66 0.809907
Target:  5'- gGCGGCGcacaUUCGUCuCGCGaau-GCGUa -3'
miRNA:   3'- gCGCCGU----AAGUAGuGCGCacuuCGCG- -5'
24849 5' -53.1 NC_005284.1 + 44128 0.66 0.84652
Target:  5'- cCGCGGCgcgcaccaGUUCcUCGCGC----AGCGCu -3'
miRNA:   3'- -GCGCCG--------UAAGuAGUGCGcacuUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 37184 0.66 0.828638
Target:  5'- gGC-GCGUUC-UCACGCGgGAucGCGUa -3'
miRNA:   3'- gCGcCGUAAGuAGUGCGCaCUu-CGCG- -5'
24849 5' -53.1 NC_005284.1 + 4652 0.66 0.817496
Target:  5'- aGCGGCAgcaacucgcuggUCGUCGCGgacCGUcAAGCGg -3'
miRNA:   3'- gCGCCGUa-----------AGUAGUGC---GCAcUUCGCg -5'
24849 5' -53.1 NC_005284.1 + 12637 0.66 0.819374
Target:  5'- gGCGGCGauaCGaCGCuGCGUGu-GCGCa -3'
miRNA:   3'- gCGCCGUaa-GUaGUG-CGCACuuCGCG- -5'
24849 5' -53.1 NC_005284.1 + 16124 0.66 0.819374
Target:  5'- gCGCGGUggcgacGUUCGguuUCGCGCagccGUGggGCa- -3'
miRNA:   3'- -GCGCCG------UAAGU---AGUGCG----CACuuCGcg -5'
24849 5' -53.1 NC_005284.1 + 19807 0.66 0.828638
Target:  5'- gGCGGCAgaucUC-UCGCGCGggGAAcCGUu -3'
miRNA:   3'- gCGCCGUa---AGuAGUGCGCa-CUUcGCG- -5'
24849 5' -53.1 NC_005284.1 + 42116 0.66 0.828638
Target:  5'- uGCGGUGUUUAUC----GUGAAGUGCc -3'
miRNA:   3'- gCGCCGUAAGUAGugcgCACUUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 33922 0.66 0.819374
Target:  5'- aGUGGCcUUCAgagaUCAgggauuUGCG-GAAGCGCc -3'
miRNA:   3'- gCGCCGuAAGU----AGU------GCGCaCUUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 9084 0.66 0.819374
Target:  5'- uCGCGGCGgggcaGUUGCGCGgucaggaucUGAauAGCGUg -3'
miRNA:   3'- -GCGCCGUaag--UAGUGCGC---------ACU--UCGCG- -5'
24849 5' -53.1 NC_005284.1 + 34002 0.66 0.818436
Target:  5'- uGCGGCGagggccgaUUCu--GCGCGUucgaggcggucgaGGAGCGCa -3'
miRNA:   3'- gCGCCGU--------AAGuagUGCGCA-------------CUUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 11848 0.66 0.813717
Target:  5'- aGCGGCucgcGUUgcaggccgacuggcgCGUCG-GCGUGAAGCGg -3'
miRNA:   3'- gCGCCG----UAA---------------GUAGUgCGCACUUCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.