miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24849 5' -53.1 NC_005284.1 + 33922 0.66 0.819374
Target:  5'- aGUGGCcUUCAgagaUCAgggauuUGCG-GAAGCGCc -3'
miRNA:   3'- gCGCCGuAAGU----AGU------GCGCaCUUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 9084 0.66 0.819374
Target:  5'- uCGCGGCGgggcaGUUGCGCGgucaggaucUGAauAGCGUg -3'
miRNA:   3'- -GCGCCGUaag--UAGUGCGC---------ACU--UCGCG- -5'
24849 5' -53.1 NC_005284.1 + 42116 0.66 0.828638
Target:  5'- uGCGGUGUUUAUC----GUGAAGUGCc -3'
miRNA:   3'- gCGCCGUAAGUAGugcgCACUUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 19807 0.66 0.828638
Target:  5'- gGCGGCAgaucUC-UCGCGCGggGAAcCGUu -3'
miRNA:   3'- gCGCCGUa---AGuAGUGCGCa-CUUcGCG- -5'
24849 5' -53.1 NC_005284.1 + 14978 0.66 0.83769
Target:  5'- gGCGGCuuccugugCGaCACgaugGCGUGAcGCGCa -3'
miRNA:   3'- gCGCCGuaa-----GUaGUG----CGCACUuCGCG- -5'
24849 5' -53.1 NC_005284.1 + 52998 0.67 0.770241
Target:  5'- uCGCGGUGggCAUCGCGUuUGccGCuGCa -3'
miRNA:   3'- -GCGCCGUaaGUAGUGCGcACuuCG-CG- -5'
24849 5' -53.1 NC_005284.1 + 19896 0.67 0.780406
Target:  5'- aCGUGGaaaUCAaUGCGgGUGggGUGCg -3'
miRNA:   3'- -GCGCCguaAGUaGUGCgCACuuCGCG- -5'
24849 5' -53.1 NC_005284.1 + 19407 0.67 0.780406
Target:  5'- gGCGGUg-----CAgGCGUGAucGGCGCg -3'
miRNA:   3'- gCGCCGuaaguaGUgCGCACU--UCGCG- -5'
24849 5' -53.1 NC_005284.1 + 30403 0.67 0.780406
Target:  5'- gGuCGGCAUgucgaUCGUC-CGCGUgcgcgacggcGAGGUGCu -3'
miRNA:   3'- gC-GCCGUA-----AGUAGuGCGCA----------CUUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 26936 0.67 0.790412
Target:  5'- gCGCcgGGCGggcgUCGUCugGCGacucccAGCGCu -3'
miRNA:   3'- -GCG--CCGUa---AGUAGugCGCacu---UCGCG- -5'
24849 5' -53.1 NC_005284.1 + 17720 0.67 0.790412
Target:  5'- -aCGGCGUUCGgcugCACGUcgcAGGCGCa -3'
miRNA:   3'- gcGCCGUAAGUa---GUGCGcacUUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 11810 0.67 0.770241
Target:  5'- gGCGGagcagGUCGCGCGc-GAGCGCg -3'
miRNA:   3'- gCGCCguaagUAGUGCGCacUUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 23594 0.67 0.770241
Target:  5'- aGCGGU--UCAUCgACGCGgcgGGuuuugcucaugAGCGCc -3'
miRNA:   3'- gCGCCGuaAGUAG-UGCGCa--CU-----------UCGCG- -5'
24849 5' -53.1 NC_005284.1 + 21575 0.67 0.75993
Target:  5'- gCGCgGGCGUUCGacgCGCaGCGgcaugccGAAGCGUu -3'
miRNA:   3'- -GCG-CCGUAAGUa--GUG-CGCa------CUUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 3514 0.67 0.749486
Target:  5'- aGCGcCGUUCGaagcacguucuUCGCGCGUGGcuCGCu -3'
miRNA:   3'- gCGCcGUAAGU-----------AGUGCGCACUucGCG- -5'
24849 5' -53.1 NC_005284.1 + 52871 0.67 0.758892
Target:  5'- aGCuGGUgcgacagGUUCGUUGCGCGUGcgggucgagcgGAGUGCa -3'
miRNA:   3'- gCG-CCG-------UAAGUAGUGCGCAC-----------UUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 51949 0.67 0.777372
Target:  5'- uCGCGGCcgUCGaauucccaagaaccUCACGUGcguauUGAaucGGCGUa -3'
miRNA:   3'- -GCGCCGuaAGU--------------AGUGCGC-----ACU---UCGCG- -5'
24849 5' -53.1 NC_005284.1 + 7496 0.67 0.80025
Target:  5'- uCGCGcGCGUUgAUCACGCGgcGAcGGcCGUc -3'
miRNA:   3'- -GCGC-CGUAAgUAGUGCGCa-CU-UC-GCG- -5'
24849 5' -53.1 NC_005284.1 + 7662 0.67 0.753679
Target:  5'- gGCGGCGUcggUCAaugggcugauuUCggcgacguacagcguGCGCGUGAgcGGUGCg -3'
miRNA:   3'- gCGCCGUA---AGU-----------AG---------------UGCGCACU--UCGCG- -5'
24849 5' -53.1 NC_005284.1 + 9486 0.68 0.738918
Target:  5'- uCGCGGCGacgCAggcggCGacaGCGUGGgucGGCGCc -3'
miRNA:   3'- -GCGCCGUaa-GUa----GUg--CGCACU---UCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.