Results 1 - 20 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24849 | 5' | -53.1 | NC_005284.1 | + | 33643 | 1.12 | 0.001052 |
Target: 5'- gCGCGGCAUUCAUCACGCGUGAAGCGCu -3' miRNA: 3'- -GCGCCGUAAGUAGUGCGCACUUCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 53893 | 0.79 | 0.18398 |
Target: 5'- gGCGGCcgUCGUCgcuugccuuggccuGCGCGUaGAGCGCu -3' miRNA: 3'- gCGCCGuaAGUAG--------------UGCGCAcUUCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 54472 | 0.77 | 0.25558 |
Target: 5'- gCGCGGCAaUCGUCAUGCGcGAGGauacggaacCGCg -3' miRNA: 3'- -GCGCCGUaAGUAGUGCGCaCUUC---------GCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 11605 | 0.77 | 0.262309 |
Target: 5'- aCGCGGCcgagCGUCA-GCGUGAcgugcAGCGCg -3' miRNA: 3'- -GCGCCGuaa-GUAGUgCGCACU-----UCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 38084 | 0.76 | 0.305728 |
Target: 5'- uGUGGC--UCGUCGCGCGgacGAAGaCGCg -3' miRNA: 3'- gCGCCGuaAGUAGUGCGCa--CUUC-GCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 37790 | 0.74 | 0.387112 |
Target: 5'- gCGuCGGCGaUCGUCGCcgugugcgcguucgGCGUGAugcGGCGCa -3' miRNA: 3'- -GC-GCCGUaAGUAGUG--------------CGCACU---UCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 50675 | 0.73 | 0.457074 |
Target: 5'- aCGUGGCGgaauuaUCGUCugugaGCG-GAAGCGCg -3' miRNA: 3'- -GCGCCGUa-----AGUAGug---CGCaCUUCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 48002 | 0.73 | 0.447085 |
Target: 5'- uGCGGaAUUCG-CGgGCGUGAcGCGCg -3' miRNA: 3'- gCGCCgUAAGUaGUgCGCACUuCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 11257 | 0.73 | 0.427479 |
Target: 5'- aCGCGGCAgcggC-UCGCGCGgcgaaggGggGCGg -3' miRNA: 3'- -GCGCCGUaa--GuAGUGCGCa------CuuCGCg -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 42276 | 0.73 | 0.417869 |
Target: 5'- gCGcCGGuCGUcgaggUCGUCAggagcuuuuCGCGUGAGGCGCu -3' miRNA: 3'- -GC-GCC-GUA-----AGUAGU---------GCGCACUUCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 45896 | 0.73 | 0.437219 |
Target: 5'- aGCGGUugccgUgGUCGCGCGcGAuGCGCa -3' miRNA: 3'- gCGCCGua---AgUAGUGCGCaCUuCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 36823 | 0.72 | 0.5087 |
Target: 5'- cCGaCGGCAga-AUCGC-CGUGAAGCGa -3' miRNA: 3'- -GC-GCCGUaagUAGUGcGCACUUCGCg -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 21525 | 0.71 | 0.551696 |
Target: 5'- gCGCGGCAg-CAUCGCccacuGCG-GAGGCGg -3' miRNA: 3'- -GCGCCGUaaGUAGUG-----CGCaCUUCGCg -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 24636 | 0.71 | 0.551696 |
Target: 5'- uGCGGCGaacugaccgucUUCAgUCGCGCGcGgcGUGCa -3' miRNA: 3'- gCGCCGU-----------AAGU-AGUGCGCaCuuCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 32938 | 0.71 | 0.551696 |
Target: 5'- gGCGGCGgcacCAUCGCccacgccgGCGgcgcugGAAGCGCc -3' miRNA: 3'- gCGCCGUaa--GUAGUG--------CGCa-----CUUCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 25528 | 0.71 | 0.530039 |
Target: 5'- aGCGGCcgUCGUCgugcGCGCGUcGcucuauuuuGAGCGUg -3' miRNA: 3'- gCGCCGuaAGUAG----UGCGCA-C---------UUCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 18104 | 0.71 | 0.530039 |
Target: 5'- uCGCGGCGcagcagUAUCGCGuUGUGAGcGUGCa -3' miRNA: 3'- -GCGCCGUaa----GUAGUGC-GCACUU-CGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 12050 | 0.7 | 0.595728 |
Target: 5'- gCGCGGUuUUCG--GCGCGUGcGGCGa -3' miRNA: 3'- -GCGCCGuAAGUagUGCGCACuUCGCg -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 49617 | 0.7 | 0.595728 |
Target: 5'- aGUGGCGUUUgagcugAUCGCGCGUcaGcGGCGUu -3' miRNA: 3'- gCGCCGUAAG------UAGUGCGCA--CuUCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 17470 | 0.7 | 0.595728 |
Target: 5'- uCGCGGCAUUUcgUAC---UGggGCGCc -3' miRNA: 3'- -GCGCCGUAAGuaGUGcgcACuuCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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