miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24849 5' -53.1 NC_005284.1 + 33643 1.12 0.001052
Target:  5'- gCGCGGCAUUCAUCACGCGUGAAGCGCu -3'
miRNA:   3'- -GCGCCGUAAGUAGUGCGCACUUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 53893 0.79 0.18398
Target:  5'- gGCGGCcgUCGUCgcuugccuuggccuGCGCGUaGAGCGCu -3'
miRNA:   3'- gCGCCGuaAGUAG--------------UGCGCAcUUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 54472 0.77 0.25558
Target:  5'- gCGCGGCAaUCGUCAUGCGcGAGGauacggaacCGCg -3'
miRNA:   3'- -GCGCCGUaAGUAGUGCGCaCUUC---------GCG- -5'
24849 5' -53.1 NC_005284.1 + 11605 0.77 0.262309
Target:  5'- aCGCGGCcgagCGUCA-GCGUGAcgugcAGCGCg -3'
miRNA:   3'- -GCGCCGuaa-GUAGUgCGCACU-----UCGCG- -5'
24849 5' -53.1 NC_005284.1 + 38084 0.76 0.305728
Target:  5'- uGUGGC--UCGUCGCGCGgacGAAGaCGCg -3'
miRNA:   3'- gCGCCGuaAGUAGUGCGCa--CUUC-GCG- -5'
24849 5' -53.1 NC_005284.1 + 37790 0.74 0.387112
Target:  5'- gCGuCGGCGaUCGUCGCcgugugcgcguucgGCGUGAugcGGCGCa -3'
miRNA:   3'- -GC-GCCGUaAGUAGUG--------------CGCACU---UCGCG- -5'
24849 5' -53.1 NC_005284.1 + 42276 0.73 0.417869
Target:  5'- gCGcCGGuCGUcgaggUCGUCAggagcuuuuCGCGUGAGGCGCu -3'
miRNA:   3'- -GC-GCC-GUA-----AGUAGU---------GCGCACUUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 11257 0.73 0.427479
Target:  5'- aCGCGGCAgcggC-UCGCGCGgcgaaggGggGCGg -3'
miRNA:   3'- -GCGCCGUaa--GuAGUGCGCa------CuuCGCg -5'
24849 5' -53.1 NC_005284.1 + 45896 0.73 0.437219
Target:  5'- aGCGGUugccgUgGUCGCGCGcGAuGCGCa -3'
miRNA:   3'- gCGCCGua---AgUAGUGCGCaCUuCGCG- -5'
24849 5' -53.1 NC_005284.1 + 48002 0.73 0.447085
Target:  5'- uGCGGaAUUCG-CGgGCGUGAcGCGCg -3'
miRNA:   3'- gCGCCgUAAGUaGUgCGCACUuCGCG- -5'
24849 5' -53.1 NC_005284.1 + 50675 0.73 0.457074
Target:  5'- aCGUGGCGgaauuaUCGUCugugaGCG-GAAGCGCg -3'
miRNA:   3'- -GCGCCGUa-----AGUAGug---CGCaCUUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 36823 0.72 0.5087
Target:  5'- cCGaCGGCAga-AUCGC-CGUGAAGCGa -3'
miRNA:   3'- -GC-GCCGUaagUAGUGcGCACUUCGCg -5'
24849 5' -53.1 NC_005284.1 + 25528 0.71 0.530039
Target:  5'- aGCGGCcgUCGUCgugcGCGCGUcGcucuauuuuGAGCGUg -3'
miRNA:   3'- gCGCCGuaAGUAG----UGCGCA-C---------UUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 18104 0.71 0.530039
Target:  5'- uCGCGGCGcagcagUAUCGCGuUGUGAGcGUGCa -3'
miRNA:   3'- -GCGCCGUaa----GUAGUGC-GCACUU-CGCG- -5'
24849 5' -53.1 NC_005284.1 + 32938 0.71 0.551696
Target:  5'- gGCGGCGgcacCAUCGCccacgccgGCGgcgcugGAAGCGCc -3'
miRNA:   3'- gCGCCGUaa--GUAGUG--------CGCa-----CUUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 24636 0.71 0.551696
Target:  5'- uGCGGCGaacugaccgucUUCAgUCGCGCGcGgcGUGCa -3'
miRNA:   3'- gCGCCGU-----------AAGU-AGUGCGCaCuuCGCG- -5'
24849 5' -53.1 NC_005284.1 + 21525 0.71 0.551696
Target:  5'- gCGCGGCAg-CAUCGCccacuGCG-GAGGCGg -3'
miRNA:   3'- -GCGCCGUaaGUAGUG-----CGCaCUUCGCg -5'
24849 5' -53.1 NC_005284.1 + 50895 0.7 0.572513
Target:  5'- gGCGGCucggcgcAUUCAUCGagaGCG-GAgauAGCGCa -3'
miRNA:   3'- gCGCCG-------UAAGUAGUg--CGCaCU---UCGCG- -5'
24849 5' -53.1 NC_005284.1 + 21133 0.7 0.58465
Target:  5'- aCGCGGgcCAgcgCuUCACGCGUGAugaaugccGCGCg -3'
miRNA:   3'- -GCGCC--GUaa-GuAGUGCGCACUu-------CGCG- -5'
24849 5' -53.1 NC_005284.1 + 12050 0.7 0.595728
Target:  5'- gCGCGGUuUUCG--GCGCGUGcGGCGa -3'
miRNA:   3'- -GCGCCGuAAGUagUGCGCACuUCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.