Results 21 - 40 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24849 | 5' | -53.1 | NC_005284.1 | + | 34002 | 0.66 | 0.818436 |
Target: 5'- uGCGGCGagggccgaUUCu--GCGCGUucgaggcggucgaGGAGCGCa -3' miRNA: 3'- gCGCCGU--------AAGuagUGCGCA-------------CUUCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 4652 | 0.66 | 0.817496 |
Target: 5'- aGCGGCAgcaacucgcuggUCGUCGCGgacCGUcAAGCGg -3' miRNA: 3'- gCGCCGUa-----------AGUAGUGC---GCAcUUCGCg -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 11848 | 0.66 | 0.813717 |
Target: 5'- aGCGGCucgcGUUgcaggccgacuggcgCGUCG-GCGUGAAGCGg -3' miRNA: 3'- gCGCCG----UAA---------------GUAGUgCGCACUUCGCg -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 22585 | 0.66 | 0.809907 |
Target: 5'- gGCGGCGcacaUUCGUCuCGCGaau-GCGUa -3' miRNA: 3'- gCGCCGU----AAGUAGuGCGCacuuCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 24235 | 0.66 | 0.80895 |
Target: 5'- cCGCGGUgugGUgggauuuacccgaUCGUCA-GCGUaAAGCGCg -3' miRNA: 3'- -GCGCCG---UA-------------AGUAGUgCGCAcUUCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 7496 | 0.67 | 0.80025 |
Target: 5'- uCGCGcGCGUUgAUCACGCGgcGAcGGcCGUc -3' miRNA: 3'- -GCGC-CGUAAgUAGUGCGCa-CU-UC-GCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 26936 | 0.67 | 0.790412 |
Target: 5'- gCGCcgGGCGggcgUCGUCugGCGacucccAGCGCu -3' miRNA: 3'- -GCG--CCGUa---AGUAGugCGCacu---UCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 17720 | 0.67 | 0.790412 |
Target: 5'- -aCGGCGUUCGgcugCACGUcgcAGGCGCa -3' miRNA: 3'- gcGCCGUAAGUa---GUGCGcacUUCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 30403 | 0.67 | 0.780406 |
Target: 5'- gGuCGGCAUgucgaUCGUC-CGCGUgcgcgacggcGAGGUGCu -3' miRNA: 3'- gC-GCCGUA-----AGUAGuGCGCA----------CUUCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 19896 | 0.67 | 0.780406 |
Target: 5'- aCGUGGaaaUCAaUGCGgGUGggGUGCg -3' miRNA: 3'- -GCGCCguaAGUaGUGCgCACuuCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 19407 | 0.67 | 0.780406 |
Target: 5'- gGCGGUg-----CAgGCGUGAucGGCGCg -3' miRNA: 3'- gCGCCGuaaguaGUgCGCACU--UCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 51949 | 0.67 | 0.777372 |
Target: 5'- uCGCGGCcgUCGaauucccaagaaccUCACGUGcguauUGAaucGGCGUa -3' miRNA: 3'- -GCGCCGuaAGU--------------AGUGCGC-----ACU---UCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 23594 | 0.67 | 0.770241 |
Target: 5'- aGCGGU--UCAUCgACGCGgcgGGuuuugcucaugAGCGCc -3' miRNA: 3'- gCGCCGuaAGUAG-UGCGCa--CU-----------UCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 11810 | 0.67 | 0.770241 |
Target: 5'- gGCGGagcagGUCGCGCGc-GAGCGCg -3' miRNA: 3'- gCGCCguaagUAGUGCGCacUUCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 52998 | 0.67 | 0.770241 |
Target: 5'- uCGCGGUGggCAUCGCGUuUGccGCuGCa -3' miRNA: 3'- -GCGCCGUaaGUAGUGCGcACuuCG-CG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 21575 | 0.67 | 0.75993 |
Target: 5'- gCGCgGGCGUUCGacgCGCaGCGgcaugccGAAGCGUu -3' miRNA: 3'- -GCG-CCGUAAGUa--GUG-CGCa------CUUCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 52871 | 0.67 | 0.758892 |
Target: 5'- aGCuGGUgcgacagGUUCGUUGCGCGUGcgggucgagcgGAGUGCa -3' miRNA: 3'- gCG-CCG-------UAAGUAGUGCGCAC-----------UUCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 7662 | 0.67 | 0.753679 |
Target: 5'- gGCGGCGUcggUCAaugggcugauuUCggcgacguacagcguGCGCGUGAgcGGUGCg -3' miRNA: 3'- gCGCCGUA---AGU-----------AG---------------UGCGCACU--UCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 3514 | 0.67 | 0.749486 |
Target: 5'- aGCGcCGUUCGaagcacguucuUCGCGCGUGGcuCGCu -3' miRNA: 3'- gCGCcGUAAGU-----------AGUGCGCACUucGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 9486 | 0.68 | 0.738918 |
Target: 5'- uCGCGGCGacgCAggcggCGacaGCGUGGgucGGCGCc -3' miRNA: 3'- -GCGCCGUaa-GUa----GUg--CGCACU---UCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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