miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24849 5' -53.1 NC_005284.1 + 2545 0.66 0.84652
Target:  5'- gGCGGUAUUacUAUCACaGgGUGAAuGaCGCc -3'
miRNA:   3'- gCGCCGUAA--GUAGUG-CgCACUU-C-GCG- -5'
24849 5' -53.1 NC_005284.1 + 3514 0.67 0.749486
Target:  5'- aGCGcCGUUCGaagcacguucuUCGCGCGUGGcuCGCu -3'
miRNA:   3'- gCGCcGUAAGU-----------AGUGCGCACUucGCG- -5'
24849 5' -53.1 NC_005284.1 + 4652 0.66 0.817496
Target:  5'- aGCGGCAgcaacucgcuggUCGUCGCGgacCGUcAAGCGg -3'
miRNA:   3'- gCGCCGUa-----------AGUAGUGC---GCAcUUCGCg -5'
24849 5' -53.1 NC_005284.1 + 4757 0.68 0.703328
Target:  5'- gGCGGCggaaGUUCcUUgagcaagcagcgguACGuCGUGggGCGCg -3'
miRNA:   3'- gCGCCG----UAAGuAG--------------UGC-GCACuuCGCG- -5'
24849 5' -53.1 NC_005284.1 + 5453 0.68 0.706602
Target:  5'- -uCGGUcgUCGcgCACGCGUGccGUGCc -3'
miRNA:   3'- gcGCCGuaAGUa-GUGCGCACuuCGCG- -5'
24849 5' -53.1 NC_005284.1 + 5519 0.66 0.819374
Target:  5'- aGCGcGC-UUCGUCACGuCGccuccUGAucGCGCg -3'
miRNA:   3'- gCGC-CGuAAGUAGUGC-GC-----ACUu-CGCG- -5'
24849 5' -53.1 NC_005284.1 + 7117 0.68 0.695665
Target:  5'- aGCGGCAUcgAUCaACGCcUGAAccuucGCGCg -3'
miRNA:   3'- gCGCCGUAagUAG-UGCGcACUU-----CGCG- -5'
24849 5' -53.1 NC_005284.1 + 7496 0.67 0.80025
Target:  5'- uCGCGcGCGUUgAUCACGCGgcGAcGGcCGUc -3'
miRNA:   3'- -GCGC-CGUAAgUAGUGCGCa-CU-UC-GCG- -5'
24849 5' -53.1 NC_005284.1 + 7662 0.67 0.753679
Target:  5'- gGCGGCGUcggUCAaugggcugauuUCggcgacguacagcguGCGCGUGAgcGGUGCg -3'
miRNA:   3'- gCGCCGUA---AGU-----------AG---------------UGCGCACU--UCGCG- -5'
24849 5' -53.1 NC_005284.1 + 8117 0.69 0.684664
Target:  5'- gGCGGCGUUCGgccccgugCAcaaccgcauCGuCGUGAAGgCGCu -3'
miRNA:   3'- gCGCCGUAAGUa-------GU---------GC-GCACUUC-GCG- -5'
24849 5' -53.1 NC_005284.1 + 9084 0.66 0.819374
Target:  5'- uCGCGGCGgggcaGUUGCGCGgucaggaucUGAauAGCGUg -3'
miRNA:   3'- -GCGCCGUaag--UAGUGCGC---------ACU--UCGCG- -5'
24849 5' -53.1 NC_005284.1 + 9144 0.66 0.849988
Target:  5'- uCGCGGaugcUAUCGCGCGcGGcaugggcaagaguucGGCGCa -3'
miRNA:   3'- -GCGCCguaaGUAGUGCGCaCU---------------UCGCG- -5'
24849 5' -53.1 NC_005284.1 + 9486 0.68 0.738918
Target:  5'- uCGCGGCGacgCAggcggCGacaGCGUGGgucGGCGCc -3'
miRNA:   3'- -GCGCCGUaa-GUa----GUg--CGCACU---UCGCG- -5'
24849 5' -53.1 NC_005284.1 + 9855 0.7 0.629113
Target:  5'- aCGCGGCGaUCAUCGCucGCGaGAcggcAGcCGCa -3'
miRNA:   3'- -GCGCCGUaAGUAGUG--CGCaCU----UC-GCG- -5'
24849 5' -53.1 NC_005284.1 + 9936 0.68 0.717465
Target:  5'- aGCGGCGUaCG--GCGCuUGAGGCGg -3'
miRNA:   3'- gCGCCGUAaGUagUGCGcACUUCGCg -5'
24849 5' -53.1 NC_005284.1 + 11257 0.73 0.427479
Target:  5'- aCGCGGCAgcggC-UCGCGCGgcgaaggGggGCGg -3'
miRNA:   3'- -GCGCCGUaa--GuAGUGCGCa------CuuCGCg -5'
24849 5' -53.1 NC_005284.1 + 11605 0.77 0.262309
Target:  5'- aCGCGGCcgagCGUCA-GCGUGAcgugcAGCGCg -3'
miRNA:   3'- -GCGCCGuaa-GUAGUgCGCACU-----UCGCG- -5'
24849 5' -53.1 NC_005284.1 + 11810 0.67 0.770241
Target:  5'- gGCGGagcagGUCGCGCGc-GAGCGCg -3'
miRNA:   3'- gCGCCguaagUAGUGCGCacUUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 11848 0.66 0.813717
Target:  5'- aGCGGCucgcGUUgcaggccgacuggcgCGUCG-GCGUGAAGCGg -3'
miRNA:   3'- gCGCCG----UAA---------------GUAGUgCGCACUUCGCg -5'
24849 5' -53.1 NC_005284.1 + 12050 0.7 0.595728
Target:  5'- gCGCGGUuUUCG--GCGCGUGcGGCGa -3'
miRNA:   3'- -GCGCCGuAAGUagUGCGCACuUCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.