miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24849 5' -53.1 NC_005284.1 + 12231 0.66 0.828638
Target:  5'- uGCGGCAUUCAaCAUaGCGaacAGCGg -3'
miRNA:   3'- gCGCCGUAAGUaGUG-CGCacuUCGCg -5'
24849 5' -53.1 NC_005284.1 + 12637 0.66 0.819374
Target:  5'- gGCGGCGauaCGaCGCuGCGUGu-GCGCa -3'
miRNA:   3'- gCGCCGUaa-GUaGUG-CGCACuuCGCG- -5'
24849 5' -53.1 NC_005284.1 + 14274 0.69 0.673612
Target:  5'- uGCGGCGUUaCAggACGCGgucAAGCGg -3'
miRNA:   3'- gCGCCGUAA-GUagUGCGCac-UUCGCg -5'
24849 5' -53.1 NC_005284.1 + 14934 0.7 0.617969
Target:  5'- aGCGGUugcgaacgUCgAUUugGCGUGAAuaacGCGCg -3'
miRNA:   3'- gCGCCGua------AG-UAGugCGCACUU----CGCG- -5'
24849 5' -53.1 NC_005284.1 + 14978 0.66 0.83769
Target:  5'- gGCGGCuuccugugCGaCACgaugGCGUGAcGCGCa -3'
miRNA:   3'- gCGCCGuaa-----GUaGUG----CGCACUuCGCG- -5'
24849 5' -53.1 NC_005284.1 + 15497 0.68 0.728241
Target:  5'- gCGCGGCGUcgCGUUACcCGacuucGAGCGCg -3'
miRNA:   3'- -GCGCCGUAa-GUAGUGcGCac---UUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 16124 0.66 0.819374
Target:  5'- gCGCGGUggcgacGUUCGguuUCGCGCagccGUGggGCa- -3'
miRNA:   3'- -GCGCCG------UAAGU---AGUGCG----CACuuCGcg -5'
24849 5' -53.1 NC_005284.1 + 16972 0.69 0.640259
Target:  5'- cCGCGuGCGccgCAUCACGCc-GAAcGCGCa -3'
miRNA:   3'- -GCGC-CGUaa-GUAGUGCGcaCUU-CGCG- -5'
24849 5' -53.1 NC_005284.1 + 17422 0.66 0.819374
Target:  5'- cCGCGGCGUcaaCGUCGaa-GUGAaggggcccgGGCGCu -3'
miRNA:   3'- -GCGCCGUAa--GUAGUgcgCACU---------UCGCG- -5'
24849 5' -53.1 NC_005284.1 + 17470 0.7 0.595728
Target:  5'- uCGCGGCAUUUcgUAC---UGggGCGCc -3'
miRNA:   3'- -GCGCCGUAAGuaGUGcgcACuuCGCG- -5'
24849 5' -53.1 NC_005284.1 + 17720 0.67 0.790412
Target:  5'- -aCGGCGUUCGgcugCACGUcgcAGGCGCa -3'
miRNA:   3'- gcGCCGUAAGUa---GUGCGcacUUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 18104 0.71 0.530039
Target:  5'- uCGCGGCGcagcagUAUCGCGuUGUGAGcGUGCa -3'
miRNA:   3'- -GCGCCGUaa----GUAGUGC-GCACUU-CGCG- -5'
24849 5' -53.1 NC_005284.1 + 19407 0.67 0.780406
Target:  5'- gGCGGUg-----CAgGCGUGAucGGCGCg -3'
miRNA:   3'- gCGCCGuaaguaGUgCGCACU--UCGCG- -5'
24849 5' -53.1 NC_005284.1 + 19602 0.66 0.83769
Target:  5'- aGCGGCAUUCGgacggUUAuCGaCGgaaacGGAGUGCg -3'
miRNA:   3'- gCGCCGUAAGU-----AGU-GC-GCa----CUUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 19807 0.66 0.828638
Target:  5'- gGCGGCAgaucUC-UCGCGCGggGAAcCGUu -3'
miRNA:   3'- gCGCCGUa---AGuAGUGCGCa-CUUcGCG- -5'
24849 5' -53.1 NC_005284.1 + 19896 0.67 0.780406
Target:  5'- aCGUGGaaaUCAaUGCGgGUGggGUGCg -3'
miRNA:   3'- -GCGCCguaAGUaGUGCgCACuuCGCG- -5'
24849 5' -53.1 NC_005284.1 + 21133 0.7 0.58465
Target:  5'- aCGCGGgcCAgcgCuUCACGCGUGAugaaugccGCGCg -3'
miRNA:   3'- -GCGCC--GUaa-GuAGUGCGCACUu-------CGCG- -5'
24849 5' -53.1 NC_005284.1 + 21326 0.68 0.728241
Target:  5'- uGCGGgCGacuggCGggGCGCGUGucGCGCg -3'
miRNA:   3'- gCGCC-GUaa---GUagUGCGCACuuCGCG- -5'
24849 5' -53.1 NC_005284.1 + 21362 0.68 0.738918
Target:  5'- gCGCaGGCGUgCA--ACGaCGUGggGUGCu -3'
miRNA:   3'- -GCG-CCGUAaGUagUGC-GCACuuCGCG- -5'
24849 5' -53.1 NC_005284.1 + 21525 0.71 0.551696
Target:  5'- gCGCGGCAg-CAUCGCccacuGCG-GAGGCGg -3'
miRNA:   3'- -GCGCCGUaaGUAGUG-----CGCaCUUCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.