Results 41 - 60 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24849 | 5' | -53.1 | NC_005284.1 | + | 21575 | 0.67 | 0.75993 |
Target: 5'- gCGCgGGCGUUCGacgCGCaGCGgcaugccGAAGCGUu -3' miRNA: 3'- -GCG-CCGUAAGUa--GUG-CGCa------CUUCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 22585 | 0.66 | 0.809907 |
Target: 5'- gGCGGCGcacaUUCGUCuCGCGaau-GCGUa -3' miRNA: 3'- gCGCCGU----AAGUAGuGCGCacuuCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 23090 | 0.66 | 0.84652 |
Target: 5'- uGCGGCua-CGUaCGCGCuUGAacuacgugAGCGCu -3' miRNA: 3'- gCGCCGuaaGUA-GUGCGcACU--------UCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 23174 | 0.69 | 0.651399 |
Target: 5'- uCGCGGCgcGUUCcgCuCGUGUGAuGGCuGCa -3' miRNA: 3'- -GCGCCG--UAAGuaGuGCGCACU-UCG-CG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 23364 | 0.69 | 0.66252 |
Target: 5'- aGCGGCGcaCGUCGCcCGcGAacuGGCGCa -3' miRNA: 3'- gCGCCGUaaGUAGUGcGCaCU---UCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 23594 | 0.67 | 0.770241 |
Target: 5'- aGCGGU--UCAUCgACGCGgcgGGuuuugcucaugAGCGCc -3' miRNA: 3'- gCGCCGuaAGUAG-UGCGCa--CU-----------UCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 24235 | 0.66 | 0.80895 |
Target: 5'- cCGCGGUgugGUgggauuuacccgaUCGUCA-GCGUaAAGCGCg -3' miRNA: 3'- -GCGCCG---UA-------------AGUAGUgCGCAcUUCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 24636 | 0.71 | 0.551696 |
Target: 5'- uGCGGCGaacugaccgucUUCAgUCGCGCGcGgcGUGCa -3' miRNA: 3'- gCGCCGU-----------AAGU-AGUGCGCaCuuCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 25528 | 0.71 | 0.530039 |
Target: 5'- aGCGGCcgUCGUCgugcGCGCGUcGcucuauuuuGAGCGUg -3' miRNA: 3'- gCGCCGuaAGUAG----UGCGCA-C---------UUCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 26936 | 0.67 | 0.790412 |
Target: 5'- gCGCcgGGCGggcgUCGUCugGCGacucccAGCGCu -3' miRNA: 3'- -GCG--CCGUa---AGUAGugCGCacu---UCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 27504 | 0.68 | 0.695665 |
Target: 5'- gGUGGCGaUgAUCgauggGCGCGUcGAGGCGUu -3' miRNA: 3'- gCGCCGUaAgUAG-----UGCGCA-CUUCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 28396 | 0.68 | 0.727167 |
Target: 5'- aGCGGCGcagcCAcgcugccguugauUCGCGCGUGuuguagaccGGCGCg -3' miRNA: 3'- gCGCCGUaa--GU-------------AGUGCGCACu--------UCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 30403 | 0.67 | 0.780406 |
Target: 5'- gGuCGGCAUgucgaUCGUC-CGCGUgcgcgacggcGAGGUGCu -3' miRNA: 3'- gC-GCCGUA-----AGUAGuGCGCA----------CUUCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 32938 | 0.71 | 0.551696 |
Target: 5'- gGCGGCGgcacCAUCGCccacgccgGCGgcgcugGAAGCGCc -3' miRNA: 3'- gCGCCGUaa--GUAGUG--------CGCa-----CUUCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 33147 | 0.7 | 0.595728 |
Target: 5'- gCGCGGCGaUCG-CACGCugcucggcGUcGAGCGCg -3' miRNA: 3'- -GCGCCGUaAGUaGUGCG--------CAcUUCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 33643 | 1.12 | 0.001052 |
Target: 5'- gCGCGGCAUUCAUCACGCGUGAAGCGCu -3' miRNA: 3'- -GCGCCGUAAGUAGUGCGCACUUCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 33922 | 0.66 | 0.819374 |
Target: 5'- aGUGGCcUUCAgagaUCAgggauuUGCG-GAAGCGCc -3' miRNA: 3'- gCGCCGuAAGU----AGU------GCGCaCUUCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 34002 | 0.66 | 0.818436 |
Target: 5'- uGCGGCGagggccgaUUCu--GCGCGUucgaggcggucgaGGAGCGCa -3' miRNA: 3'- gCGCCGU--------AAGuagUGCGCA-------------CUUCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 36823 | 0.72 | 0.5087 |
Target: 5'- cCGaCGGCAga-AUCGC-CGUGAAGCGa -3' miRNA: 3'- -GC-GCCGUaagUAGUGcGCACUUCGCg -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 37005 | 0.68 | 0.725018 |
Target: 5'- uCGCGGCGUUCGccuuuaccucguccUCgACGCGcUGcuguAGUGCc -3' miRNA: 3'- -GCGCCGUAAGU--------------AG-UGCGC-ACu---UCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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