miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24849 5' -53.1 NC_005284.1 + 54472 0.77 0.25558
Target:  5'- gCGCGGCAaUCGUCAUGCGcGAGGauacggaacCGCg -3'
miRNA:   3'- -GCGCCGUaAGUAGUGCGCaCUUC---------GCG- -5'
24849 5' -53.1 NC_005284.1 + 53893 0.79 0.18398
Target:  5'- gGCGGCcgUCGUCgcuugccuuggccuGCGCGUaGAGCGCu -3'
miRNA:   3'- gCGCCGuaAGUAG--------------UGCGCAcUUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 53796 0.69 0.66252
Target:  5'- uGCGGCGagcgCAUCuuGCGUcauGCGCa -3'
miRNA:   3'- gCGCCGUaa--GUAGugCGCAcuuCGCG- -5'
24849 5' -53.1 NC_005284.1 + 52998 0.67 0.770241
Target:  5'- uCGCGGUGggCAUCGCGUuUGccGCuGCa -3'
miRNA:   3'- -GCGCCGUaaGUAGUGCGcACuuCG-CG- -5'
24849 5' -53.1 NC_005284.1 + 52871 0.67 0.758892
Target:  5'- aGCuGGUgcgacagGUUCGUUGCGCGUGcgggucgagcgGAGUGCa -3'
miRNA:   3'- gCG-CCG-------UAAGUAGUGCGCAC-----------UUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 51949 0.67 0.777372
Target:  5'- uCGCGGCcgUCGaauucccaagaaccUCACGUGcguauUGAaucGGCGUa -3'
miRNA:   3'- -GCGCCGuaAGU--------------AGUGCGC-----ACU---UCGCG- -5'
24849 5' -53.1 NC_005284.1 + 51516 0.68 0.728241
Target:  5'- aCGCGGgAcgCugaugGCGUGAAGCGCu -3'
miRNA:   3'- -GCGCCgUaaGuagugCGCACUUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 50895 0.7 0.572513
Target:  5'- gGCGGCucggcgcAUUCAUCGagaGCG-GAgauAGCGCa -3'
miRNA:   3'- gCGCCG-------UAAGUAGUg--CGCaCU---UCGCG- -5'
24849 5' -53.1 NC_005284.1 + 50675 0.73 0.457074
Target:  5'- aCGUGGCGgaauuaUCGUCugugaGCG-GAAGCGCg -3'
miRNA:   3'- -GCGCCGUa-----AGUAGug---CGCaCUUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 50115 0.66 0.83769
Target:  5'- aCGCGGCGaUCGcgCACGCGgcguuCGCc -3'
miRNA:   3'- -GCGCCGUaAGUa-GUGCGCacuucGCG- -5'
24849 5' -53.1 NC_005284.1 + 49617 0.7 0.595728
Target:  5'- aGUGGCGUUUgagcugAUCGCGCGUcaGcGGCGUu -3'
miRNA:   3'- gCGCCGUAAG------UAGUGCGCA--CuUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 48002 0.73 0.447085
Target:  5'- uGCGGaAUUCG-CGgGCGUGAcGCGCg -3'
miRNA:   3'- gCGCCgUAAGUaGUgCGCACUuCGCG- -5'
24849 5' -53.1 NC_005284.1 + 47283 0.69 0.684664
Target:  5'- uCGaCGGCcgUCG-C-CGCGUGAucaacGCGCg -3'
miRNA:   3'- -GC-GCCGuaAGUaGuGCGCACUu----CGCG- -5'
24849 5' -53.1 NC_005284.1 + 45896 0.73 0.437219
Target:  5'- aGCGGUugccgUgGUCGCGCGcGAuGCGCa -3'
miRNA:   3'- gCGCCGua---AgUAGUGCGCaCUuCGCG- -5'
24849 5' -53.1 NC_005284.1 + 45201 0.66 0.84652
Target:  5'- cCGCGGCAgcgCgAUCGCccuGCGcuuUGGcgAGCGCu -3'
miRNA:   3'- -GCGCCGUaa-G-UAGUG---CGC---ACU--UCGCG- -5'
24849 5' -53.1 NC_005284.1 + 44936 0.66 0.83769
Target:  5'- uCGCGaGCGaUgAUCGcCGCGUaGGGCGUg -3'
miRNA:   3'- -GCGC-CGUaAgUAGU-GCGCAcUUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 44128 0.66 0.84652
Target:  5'- cCGCGGCgcgcaccaGUUCcUCGCGC----AGCGCu -3'
miRNA:   3'- -GCGCCG--------UAAGuAGUGCGcacuUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 42276 0.73 0.417869
Target:  5'- gCGcCGGuCGUcgaggUCGUCAggagcuuuuCGCGUGAGGCGCu -3'
miRNA:   3'- -GC-GCC-GUA-----AGUAGU---------GCGCACUUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 42116 0.66 0.828638
Target:  5'- uGCGGUGUUUAUC----GUGAAGUGCc -3'
miRNA:   3'- gCGCCGUAAGUAGugcgCACUUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 41815 0.66 0.849988
Target:  5'- gGUGGCA-UCGUgaUugGCGgaauugcggacaaagUGggGCGCc -3'
miRNA:   3'- gCGCCGUaAGUA--GugCGC---------------ACuuCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.