miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24849 5' -53.1 NC_005284.1 + 38084 0.76 0.305728
Target:  5'- uGUGGC--UCGUCGCGCGgacGAAGaCGCg -3'
miRNA:   3'- gCGCCGuaAGUAGUGCGCa--CUUC-GCG- -5'
24849 5' -53.1 NC_005284.1 + 37790 0.74 0.387112
Target:  5'- gCGuCGGCGaUCGUCGCcgugugcgcguucgGCGUGAugcGGCGCa -3'
miRNA:   3'- -GC-GCCGUaAGUAGUG--------------CGCACU---UCGCG- -5'
24849 5' -53.1 NC_005284.1 + 37184 0.66 0.828638
Target:  5'- gGC-GCGUUC-UCACGCGgGAucGCGUa -3'
miRNA:   3'- gCGcCGUAAGuAGUGCGCaCUu-CGCG- -5'
24849 5' -53.1 NC_005284.1 + 37005 0.68 0.725018
Target:  5'- uCGCGGCGUUCGccuuuaccucguccUCgACGCGcUGcuguAGUGCc -3'
miRNA:   3'- -GCGCCGUAAGU--------------AG-UGCGC-ACu---UCGCG- -5'
24849 5' -53.1 NC_005284.1 + 36823 0.72 0.5087
Target:  5'- cCGaCGGCAga-AUCGC-CGUGAAGCGa -3'
miRNA:   3'- -GC-GCCGUaagUAGUGcGCACUUCGCg -5'
24849 5' -53.1 NC_005284.1 + 34002 0.66 0.818436
Target:  5'- uGCGGCGagggccgaUUCu--GCGCGUucgaggcggucgaGGAGCGCa -3'
miRNA:   3'- gCGCCGU--------AAGuagUGCGCA-------------CUUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 33922 0.66 0.819374
Target:  5'- aGUGGCcUUCAgagaUCAgggauuUGCG-GAAGCGCc -3'
miRNA:   3'- gCGCCGuAAGU----AGU------GCGCaCUUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 33643 1.12 0.001052
Target:  5'- gCGCGGCAUUCAUCACGCGUGAAGCGCu -3'
miRNA:   3'- -GCGCCGUAAGUAGUGCGCACUUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 33147 0.7 0.595728
Target:  5'- gCGCGGCGaUCG-CACGCugcucggcGUcGAGCGCg -3'
miRNA:   3'- -GCGCCGUaAGUaGUGCG--------CAcUUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 32938 0.71 0.551696
Target:  5'- gGCGGCGgcacCAUCGCccacgccgGCGgcgcugGAAGCGCc -3'
miRNA:   3'- gCGCCGUaa--GUAGUG--------CGCa-----CUUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 30403 0.67 0.780406
Target:  5'- gGuCGGCAUgucgaUCGUC-CGCGUgcgcgacggcGAGGUGCu -3'
miRNA:   3'- gC-GCCGUA-----AGUAGuGCGCA----------CUUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 28396 0.68 0.727167
Target:  5'- aGCGGCGcagcCAcgcugccguugauUCGCGCGUGuuguagaccGGCGCg -3'
miRNA:   3'- gCGCCGUaa--GU-------------AGUGCGCACu--------UCGCG- -5'
24849 5' -53.1 NC_005284.1 + 27504 0.68 0.695665
Target:  5'- gGUGGCGaUgAUCgauggGCGCGUcGAGGCGUu -3'
miRNA:   3'- gCGCCGUaAgUAG-----UGCGCA-CUUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 26936 0.67 0.790412
Target:  5'- gCGCcgGGCGggcgUCGUCugGCGacucccAGCGCu -3'
miRNA:   3'- -GCG--CCGUa---AGUAGugCGCacu---UCGCG- -5'
24849 5' -53.1 NC_005284.1 + 25528 0.71 0.530039
Target:  5'- aGCGGCcgUCGUCgugcGCGCGUcGcucuauuuuGAGCGUg -3'
miRNA:   3'- gCGCCGuaAGUAG----UGCGCA-C---------UUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 24636 0.71 0.551696
Target:  5'- uGCGGCGaacugaccgucUUCAgUCGCGCGcGgcGUGCa -3'
miRNA:   3'- gCGCCGU-----------AAGU-AGUGCGCaCuuCGCG- -5'
24849 5' -53.1 NC_005284.1 + 24235 0.66 0.80895
Target:  5'- cCGCGGUgugGUgggauuuacccgaUCGUCA-GCGUaAAGCGCg -3'
miRNA:   3'- -GCGCCG---UA-------------AGUAGUgCGCAcUUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 23594 0.67 0.770241
Target:  5'- aGCGGU--UCAUCgACGCGgcgGGuuuugcucaugAGCGCc -3'
miRNA:   3'- gCGCCGuaAGUAG-UGCGCa--CU-----------UCGCG- -5'
24849 5' -53.1 NC_005284.1 + 23364 0.69 0.66252
Target:  5'- aGCGGCGcaCGUCGCcCGcGAacuGGCGCa -3'
miRNA:   3'- gCGCCGUaaGUAGUGcGCaCU---UCGCG- -5'
24849 5' -53.1 NC_005284.1 + 23174 0.69 0.651399
Target:  5'- uCGCGGCgcGUUCcgCuCGUGUGAuGGCuGCa -3'
miRNA:   3'- -GCGCCG--UAAGuaGuGCGCACU-UCG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.