Results 21 - 40 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24849 | 5' | -53.1 | NC_005284.1 | + | 14274 | 0.69 | 0.673612 |
Target: 5'- uGCGGCGUUaCAggACGCGgucAAGCGg -3' miRNA: 3'- gCGCCGUAA-GUagUGCGCac-UUCGCg -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 53796 | 0.69 | 0.66252 |
Target: 5'- uGCGGCGagcgCAUCuuGCGUcauGCGCa -3' miRNA: 3'- gCGCCGUaa--GUAGugCGCAcuuCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 25528 | 0.71 | 0.530039 |
Target: 5'- aGCGGCcgUCGUCgugcGCGCGUcGcucuauuuuGAGCGUg -3' miRNA: 3'- gCGCCGuaAGUAG----UGCGCA-C---------UUCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 50675 | 0.73 | 0.457074 |
Target: 5'- aCGUGGCGgaauuaUCGUCugugaGCG-GAAGCGCg -3' miRNA: 3'- -GCGCCGUa-----AGUAGug---CGCaCUUCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 48002 | 0.73 | 0.447085 |
Target: 5'- uGCGGaAUUCG-CGgGCGUGAcGCGCg -3' miRNA: 3'- gCGCCgUAAGUaGUgCGCACUuCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 11257 | 0.73 | 0.427479 |
Target: 5'- aCGCGGCAgcggC-UCGCGCGgcgaaggGggGCGg -3' miRNA: 3'- -GCGCCGUaa--GuAGUGCGCa------CuuCGCg -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 42276 | 0.73 | 0.417869 |
Target: 5'- gCGcCGGuCGUcgaggUCGUCAggagcuuuuCGCGUGAGGCGCu -3' miRNA: 3'- -GC-GCC-GUA-----AGUAGU---------GCGCACUUCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 38084 | 0.76 | 0.305728 |
Target: 5'- uGUGGC--UCGUCGCGCGgacGAAGaCGCg -3' miRNA: 3'- gCGCCGuaAGUAGUGCGCa--CUUC-GCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 11605 | 0.77 | 0.262309 |
Target: 5'- aCGCGGCcgagCGUCA-GCGUGAcgugcAGCGCg -3' miRNA: 3'- -GCGCCGuaa-GUAGUgCGCACU-----UCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 54472 | 0.77 | 0.25558 |
Target: 5'- gCGCGGCAaUCGUCAUGCGcGAGGauacggaacCGCg -3' miRNA: 3'- -GCGCCGUaAGUAGUGCGCaCUUC---------GCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 18104 | 0.71 | 0.530039 |
Target: 5'- uCGCGGCGcagcagUAUCGCGuUGUGAGcGUGCa -3' miRNA: 3'- -GCGCCGUaa----GUAGUGC-GCACUU-CGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 50895 | 0.7 | 0.572513 |
Target: 5'- gGCGGCucggcgcAUUCAUCGagaGCG-GAgauAGCGCa -3' miRNA: 3'- gCGCCG-------UAAGUAGUg--CGCaCU---UCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 23174 | 0.69 | 0.651399 |
Target: 5'- uCGCGGCgcGUUCcgCuCGUGUGAuGGCuGCa -3' miRNA: 3'- -GCGCCG--UAAGuaGuGCGCACU-UCG-CG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 16972 | 0.69 | 0.640259 |
Target: 5'- cCGCGuGCGccgCAUCACGCc-GAAcGCGCa -3' miRNA: 3'- -GCGC-CGUaa-GUAGUGCGcaCUU-CGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 9855 | 0.7 | 0.629113 |
Target: 5'- aCGCGGCGaUCAUCGCucGCGaGAcggcAGcCGCa -3' miRNA: 3'- -GCGCCGUaAGUAGUG--CGCaCU----UC-GCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 14934 | 0.7 | 0.617969 |
Target: 5'- aGCGGUugcgaacgUCgAUUugGCGUGAAuaacGCGCg -3' miRNA: 3'- gCGCCGua------AG-UAGugCGCACUU----CGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 12050 | 0.7 | 0.595728 |
Target: 5'- gCGCGGUuUUCG--GCGCGUGcGGCGa -3' miRNA: 3'- -GCGCCGuAAGUagUGCGCACuUCGCg -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 49617 | 0.7 | 0.595728 |
Target: 5'- aGUGGCGUUUgagcugAUCGCGCGUcaGcGGCGUu -3' miRNA: 3'- gCGCCGUAAG------UAGUGCGCA--CuUCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 17470 | 0.7 | 0.595728 |
Target: 5'- uCGCGGCAUUUcgUAC---UGggGCGCc -3' miRNA: 3'- -GCGCCGUAAGuaGUGcgcACuuCGCG- -5' |
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24849 | 5' | -53.1 | NC_005284.1 | + | 21133 | 0.7 | 0.58465 |
Target: 5'- aCGCGGgcCAgcgCuUCACGCGUGAugaaugccGCGCg -3' miRNA: 3'- -GCGCC--GUaa-GuAGUGCGCACUu-------CGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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