miRNA display CGI


Results 41 - 60 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24849 5' -53.1 NC_005284.1 + 54472 0.77 0.25558
Target:  5'- gCGCGGCAaUCGUCAUGCGcGAGGauacggaacCGCg -3'
miRNA:   3'- -GCGCCGUaAGUAGUGCGCaCUUC---------GCG- -5'
24849 5' -53.1 NC_005284.1 + 53893 0.79 0.18398
Target:  5'- gGCGGCcgUCGUCgcuugccuuggccuGCGCGUaGAGCGCu -3'
miRNA:   3'- gCGCCGuaAGUAG--------------UGCGCAcUUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 17470 0.7 0.595728
Target:  5'- uCGCGGCAUUUcgUAC---UGggGCGCc -3'
miRNA:   3'- -GCGCCGUAAGuaGUGcgcACuuCGCG- -5'
24849 5' -53.1 NC_005284.1 + 49617 0.7 0.595728
Target:  5'- aGUGGCGUUUgagcugAUCGCGCGUcaGcGGCGUu -3'
miRNA:   3'- gCGCCGUAAG------UAGUGCGCA--CuUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 12050 0.7 0.595728
Target:  5'- gCGCGGUuUUCG--GCGCGUGcGGCGa -3'
miRNA:   3'- -GCGCCGuAAGUagUGCGCACuUCGCg -5'
24849 5' -53.1 NC_005284.1 + 15497 0.68 0.728241
Target:  5'- gCGCGGCGUcgCGUUACcCGacuucGAGCGCg -3'
miRNA:   3'- -GCGCCGUAa-GUAGUGcGCac---UUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 37005 0.68 0.725018
Target:  5'- uCGCGGCGUUCGccuuuaccucguccUCgACGCGcUGcuguAGUGCc -3'
miRNA:   3'- -GCGCCGUAAGU--------------AG-UGCGC-ACu---UCGCG- -5'
24849 5' -53.1 NC_005284.1 + 9936 0.68 0.717465
Target:  5'- aGCGGCGUaCG--GCGCuUGAGGCGg -3'
miRNA:   3'- gCGCCGUAaGUagUGCGcACUUCGCg -5'
24849 5' -53.1 NC_005284.1 + 27504 0.68 0.695665
Target:  5'- gGUGGCGaUgAUCgauggGCGCGUcGAGGCGUu -3'
miRNA:   3'- gCGCCGUaAgUAG-----UGCGCA-CUUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 47283 0.69 0.684664
Target:  5'- uCGaCGGCcgUCG-C-CGCGUGAucaacGCGCg -3'
miRNA:   3'- -GC-GCCGuaAGUaGuGCGCACUu----CGCG- -5'
24849 5' -53.1 NC_005284.1 + 8117 0.69 0.684664
Target:  5'- gGCGGCGUUCGgccccgugCAcaaccgcauCGuCGUGAAGgCGCu -3'
miRNA:   3'- gCGCCGUAAGUa-------GU---------GC-GCACUUC-GCG- -5'
24849 5' -53.1 NC_005284.1 + 14274 0.69 0.673612
Target:  5'- uGCGGCGUUaCAggACGCGgucAAGCGg -3'
miRNA:   3'- gCGCCGUAA-GUagUGCGCac-UUCGCg -5'
24849 5' -53.1 NC_005284.1 + 14934 0.7 0.617969
Target:  5'- aGCGGUugcgaacgUCgAUUugGCGUGAAuaacGCGCg -3'
miRNA:   3'- gCGCCGua------AG-UAGugCGCACUU----CGCG- -5'
24849 5' -53.1 NC_005284.1 + 9855 0.7 0.629113
Target:  5'- aCGCGGCGaUCAUCGCucGCGaGAcggcAGcCGCa -3'
miRNA:   3'- -GCGCCGUaAGUAGUG--CGCaCU----UC-GCG- -5'
24849 5' -53.1 NC_005284.1 + 16972 0.69 0.640259
Target:  5'- cCGCGuGCGccgCAUCACGCc-GAAcGCGCa -3'
miRNA:   3'- -GCGC-CGUaa-GUAGUGCGcaCUU-CGCG- -5'
24849 5' -53.1 NC_005284.1 + 23174 0.69 0.651399
Target:  5'- uCGCGGCgcGUUCcgCuCGUGUGAuGGCuGCa -3'
miRNA:   3'- -GCGCCG--UAAGuaGuGCGCACU-UCG-CG- -5'
24849 5' -53.1 NC_005284.1 + 53796 0.69 0.66252
Target:  5'- uGCGGCGagcgCAUCuuGCGUcauGCGCa -3'
miRNA:   3'- gCGCCGUaa--GUAGugCGCAcuuCGCG- -5'
24849 5' -53.1 NC_005284.1 + 33643 1.12 0.001052
Target:  5'- gCGCGGCAUUCAUCACGCGUGAAGCGCu -3'
miRNA:   3'- -GCGCCGUAAGUAGUGCGCACUUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 45201 0.66 0.84652
Target:  5'- cCGCGGCAgcgCgAUCGCccuGCGcuuUGGcgAGCGCu -3'
miRNA:   3'- -GCGCCGUaa-G-UAGUG---CGC---ACU--UCGCG- -5'
24849 5' -53.1 NC_005284.1 + 23090 0.66 0.84652
Target:  5'- uGCGGCua-CGUaCGCGCuUGAacuacgugAGCGCu -3'
miRNA:   3'- gCGCCGuaaGUA-GUGCGcACU--------UCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.