miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24849 5' -53.1 NC_005284.1 + 44128 0.66 0.84652
Target:  5'- cCGCGGCgcgcaccaGUUCcUCGCGC----AGCGCu -3'
miRNA:   3'- -GCGCCG--------UAAGuAGUGCGcacuUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 23364 0.69 0.66252
Target:  5'- aGCGGCGcaCGUCGCcCGcGAacuGGCGCa -3'
miRNA:   3'- gCGCCGUaaGUAGUGcGCaCU---UCGCG- -5'
24849 5' -53.1 NC_005284.1 + 32938 0.71 0.551696
Target:  5'- gGCGGCGgcacCAUCGCccacgccgGCGgcgcugGAAGCGCc -3'
miRNA:   3'- gCGCCGUaa--GUAGUG--------CGCa-----CUUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 33643 1.12 0.001052
Target:  5'- gCGCGGCAUUCAUCACGCGUGAAGCGCu -3'
miRNA:   3'- -GCGCCGUAAGUAGUGCGCACUUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 44936 0.66 0.83769
Target:  5'- uCGCGaGCGaUgAUCGcCGCGUaGGGCGUg -3'
miRNA:   3'- -GCGC-CGUaAgUAGU-GCGCAcUUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 12231 0.66 0.828638
Target:  5'- uGCGGCAUUCAaCAUaGCGaacAGCGg -3'
miRNA:   3'- gCGCCGUAAGUaGUG-CGCacuUCGCg -5'
24849 5' -53.1 NC_005284.1 + 5519 0.66 0.819374
Target:  5'- aGCGcGC-UUCGUCACGuCGccuccUGAucGCGCg -3'
miRNA:   3'- gCGC-CGuAAGUAGUGC-GC-----ACUu-CGCG- -5'
24849 5' -53.1 NC_005284.1 + 7496 0.67 0.80025
Target:  5'- uCGCGcGCGUUgAUCACGCGgcGAcGGcCGUc -3'
miRNA:   3'- -GCGC-CGUAAgUAGUGCGCa-CU-UC-GCG- -5'
24849 5' -53.1 NC_005284.1 + 3514 0.67 0.749486
Target:  5'- aGCGcCGUUCGaagcacguucuUCGCGCGUGGcuCGCu -3'
miRNA:   3'- gCGCcGUAAGU-----------AGUGCGCACUucGCG- -5'
24849 5' -53.1 NC_005284.1 + 7117 0.68 0.695665
Target:  5'- aGCGGCAUcgAUCaACGCcUGAAccuucGCGCg -3'
miRNA:   3'- gCGCCGUAagUAG-UGCGcACUU-----CGCG- -5'
24849 5' -53.1 NC_005284.1 + 28396 0.68 0.727167
Target:  5'- aGCGGCGcagcCAcgcugccguugauUCGCGCGUGuuguagaccGGCGCg -3'
miRNA:   3'- gCGCCGUaa--GU-------------AGUGCGCACu--------UCGCG- -5'
24849 5' -53.1 NC_005284.1 + 52871 0.67 0.758892
Target:  5'- aGCuGGUgcgacagGUUCGUUGCGCGUGcgggucgagcgGAGUGCa -3'
miRNA:   3'- gCG-CCG-------UAAGUAGUGCGCAC-----------UUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 45201 0.66 0.84652
Target:  5'- cCGCGGCAgcgCgAUCGCccuGCGcuuUGGcgAGCGCu -3'
miRNA:   3'- -GCGCCGUaa-G-UAGUG---CGC---ACU--UCGCG- -5'
24849 5' -53.1 NC_005284.1 + 5453 0.68 0.706602
Target:  5'- -uCGGUcgUCGcgCACGCGUGccGUGCc -3'
miRNA:   3'- gcGCCGuaAGUa-GUGCGCACuuCGCG- -5'
24849 5' -53.1 NC_005284.1 + 23090 0.66 0.84652
Target:  5'- uGCGGCua-CGUaCGCGCuUGAacuacgugAGCGCu -3'
miRNA:   3'- gCGCCGuaaGUA-GUGCGcACU--------UCGCG- -5'
24849 5' -53.1 NC_005284.1 + 51949 0.67 0.777372
Target:  5'- uCGCGGCcgUCGaauucccaagaaccUCACGUGcguauUGAaucGGCGUa -3'
miRNA:   3'- -GCGCCGuaAGU--------------AGUGCGC-----ACU---UCGCG- -5'
24849 5' -53.1 NC_005284.1 + 4757 0.68 0.703328
Target:  5'- gGCGGCggaaGUUCcUUgagcaagcagcgguACGuCGUGggGCGCg -3'
miRNA:   3'- gCGCCG----UAAGuAG--------------UGC-GCACuuCGCG- -5'
24849 5' -53.1 NC_005284.1 + 33147 0.7 0.595728
Target:  5'- gCGCGGCGaUCG-CACGCugcucggcGUcGAGCGCg -3'
miRNA:   3'- -GCGCCGUaAGUaGUGCG--------CAcUUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 2545 0.66 0.84652
Target:  5'- gGCGGUAUUacUAUCACaGgGUGAAuGaCGCc -3'
miRNA:   3'- gCGCCGUAA--GUAGUG-CgCACUU-C-GCG- -5'
24849 5' -53.1 NC_005284.1 + 17422 0.66 0.819374
Target:  5'- cCGCGGCGUcaaCGUCGaa-GUGAaggggcccgGGCGCu -3'
miRNA:   3'- -GCGCCGUAa--GUAGUgcgCACU---------UCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.