miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24849 5' -53.1 NC_005284.1 + 2545 0.66 0.84652
Target:  5'- gGCGGUAUUacUAUCACaGgGUGAAuGaCGCc -3'
miRNA:   3'- gCGCCGUAA--GUAGUG-CgCACUU-C-GCG- -5'
24849 5' -53.1 NC_005284.1 + 45896 0.73 0.437219
Target:  5'- aGCGGUugccgUgGUCGCGCGcGAuGCGCa -3'
miRNA:   3'- gCGCCGua---AgUAGUGCGCaCUuCGCG- -5'
24849 5' -53.1 NC_005284.1 + 23364 0.69 0.66252
Target:  5'- aGCGGCGcaCGUCGCcCGcGAacuGGCGCa -3'
miRNA:   3'- gCGCCGUaaGUAGUGcGCaCU---UCGCG- -5'
24849 5' -53.1 NC_005284.1 + 23090 0.66 0.84652
Target:  5'- uGCGGCua-CGUaCGCGCuUGAacuacgugAGCGCu -3'
miRNA:   3'- gCGCCGuaaGUA-GUGCGcACU--------UCGCG- -5'
24849 5' -53.1 NC_005284.1 + 45201 0.66 0.84652
Target:  5'- cCGCGGCAgcgCgAUCGCccuGCGcuuUGGcgAGCGCu -3'
miRNA:   3'- -GCGCCGUaa-G-UAGUG---CGC---ACU--UCGCG- -5'
24849 5' -53.1 NC_005284.1 + 44128 0.66 0.84652
Target:  5'- cCGCGGCgcgcaccaGUUCcUCGCGC----AGCGCu -3'
miRNA:   3'- -GCGCCG--------UAAGuAGUGCGcacuUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 48002 0.73 0.447085
Target:  5'- uGCGGaAUUCG-CGgGCGUGAcGCGCg -3'
miRNA:   3'- gCGCCgUAAGUaGUgCGCACUuCGCG- -5'
24849 5' -53.1 NC_005284.1 + 11605 0.77 0.262309
Target:  5'- aCGCGGCcgagCGUCA-GCGUGAcgugcAGCGCg -3'
miRNA:   3'- -GCGCCGuaa-GUAGUgCGCACU-----UCGCG- -5'
24849 5' -53.1 NC_005284.1 + 9486 0.68 0.738918
Target:  5'- uCGCGGCGacgCAggcggCGacaGCGUGGgucGGCGCc -3'
miRNA:   3'- -GCGCCGUaa-GUa----GUg--CGCACU---UCGCG- -5'
24849 5' -53.1 NC_005284.1 + 21326 0.68 0.728241
Target:  5'- uGCGGgCGacuggCGggGCGCGUGucGCGCg -3'
miRNA:   3'- gCGCC-GUaa---GUagUGCGCACuuCGCG- -5'
24849 5' -53.1 NC_005284.1 + 12050 0.7 0.595728
Target:  5'- gCGCGGUuUUCG--GCGCGUGcGGCGa -3'
miRNA:   3'- -GCGCCGuAAGUagUGCGCACuUCGCg -5'
24849 5' -53.1 NC_005284.1 + 49617 0.7 0.595728
Target:  5'- aGUGGCGUUUgagcugAUCGCGCGUcaGcGGCGUu -3'
miRNA:   3'- gCGCCGUAAG------UAGUGCGCA--CuUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 17470 0.7 0.595728
Target:  5'- uCGCGGCAUUUcgUAC---UGggGCGCc -3'
miRNA:   3'- -GCGCCGUAAGuaGUGcgcACuuCGCG- -5'
24849 5' -53.1 NC_005284.1 + 21133 0.7 0.58465
Target:  5'- aCGCGGgcCAgcgCuUCACGCGUGAugaaugccGCGCg -3'
miRNA:   3'- -GCGCC--GUaa-GuAGUGCGCACUu-------CGCG- -5'
24849 5' -53.1 NC_005284.1 + 11257 0.73 0.427479
Target:  5'- aCGCGGCAgcggC-UCGCGCGgcgaaggGggGCGg -3'
miRNA:   3'- -GCGCCGUaa--GuAGUGCGCa------CuuCGCg -5'
24849 5' -53.1 NC_005284.1 + 27504 0.68 0.695665
Target:  5'- gGUGGCGaUgAUCgauggGCGCGUcGAGGCGUu -3'
miRNA:   3'- gCGCCGUaAgUAG-----UGCGCA-CUUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 9936 0.68 0.717465
Target:  5'- aGCGGCGUaCG--GCGCuUGAGGCGg -3'
miRNA:   3'- gCGCCGUAaGUagUGCGcACUUCGCg -5'
24849 5' -53.1 NC_005284.1 + 37005 0.68 0.725018
Target:  5'- uCGCGGCGUUCGccuuuaccucguccUCgACGCGcUGcuguAGUGCc -3'
miRNA:   3'- -GCGCCGUAAGU--------------AG-UGCGC-ACu---UCGCG- -5'
24849 5' -53.1 NC_005284.1 + 15497 0.68 0.728241
Target:  5'- gCGCGGCGUcgCGUUACcCGacuucGAGCGCg -3'
miRNA:   3'- -GCGCCGUAa-GUAGUGcGCac---UUCGCG- -5'
24849 5' -53.1 NC_005284.1 + 51516 0.68 0.728241
Target:  5'- aCGCGGgAcgCugaugGCGUGAAGCGCu -3'
miRNA:   3'- -GCGCCgUaaGuagugCGCACUUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.