miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24850 3' -55.8 NC_005284.1 + 39515 0.66 0.716633
Target:  5'- uGCaUGUgGUGCUCGcCGCGGCcgaugugcUUCAUCg -3'
miRNA:   3'- -CGaACG-CACGAGCuGUGCCG--------AGGUGG- -5'
24850 3' -55.8 NC_005284.1 + 49338 0.66 0.710255
Target:  5'- gGCacGCGUGCgcgacgaccgaacuaUCGGuCGCaGCUUCGCCg -3'
miRNA:   3'- -CGaaCGCACG---------------AGCU-GUGcCGAGGUGG- -5'
24850 3' -55.8 NC_005284.1 + 31615 0.66 0.705988
Target:  5'- cCUUGgGUGCgggCGGCGucgagGGCgcauUCCACCu -3'
miRNA:   3'- cGAACgCACGa--GCUGUg----CCG----AGGUGG- -5'
24850 3' -55.8 NC_005284.1 + 29258 0.66 0.695271
Target:  5'- aGCgacGCGcGCaCGACgACGGCcgcuccgauUCCACCg -3'
miRNA:   3'- -CGaa-CGCaCGaGCUG-UGCCG---------AGGUGG- -5'
24850 3' -55.8 NC_005284.1 + 39128 0.66 0.695271
Target:  5'- cGCccGCGUGaUUCGGCACGccGUUCUugCu -3'
miRNA:   3'- -CGaaCGCAC-GAGCUGUGC--CGAGGugG- -5'
24850 3' -55.8 NC_005284.1 + 9691 0.66 0.695271
Target:  5'- cCUUGCGaUGCagUCGGCAUugacggcuGGCUCgAUCa -3'
miRNA:   3'- cGAACGC-ACG--AGCUGUG--------CCGAGgUGG- -5'
24850 3' -55.8 NC_005284.1 + 20409 0.66 0.695271
Target:  5'- ---cGUGUGCUCGACGUGGUucaggaugUCUACa -3'
miRNA:   3'- cgaaCGCACGAGCUGUGCCG--------AGGUGg -5'
24850 3' -55.8 NC_005284.1 + 51396 0.66 0.695271
Target:  5'- ---aGCGgGCUCGACGCGGCg----- -3'
miRNA:   3'- cgaaCGCaCGAGCUGUGCCGaggugg -5'
24850 3' -55.8 NC_005284.1 + 33975 0.66 0.694196
Target:  5'- cGCUgcUGCGggcUGCUCGACaggggguGCGGCgaggGCCg -3'
miRNA:   3'- -CGA--ACGC---ACGAGCUG-------UGCCGagg-UGG- -5'
24850 3' -55.8 NC_005284.1 + 47823 0.66 0.692044
Target:  5'- cGCUgcgaUGgGUGCUCGGCauugacgacGCGGaaagcgcacaggaggCCACCg -3'
miRNA:   3'- -CGA----ACgCACGAGCUG---------UGCCga-------------GGUGG- -5'
24850 3' -55.8 NC_005284.1 + 21727 0.66 0.684494
Target:  5'- --aUGCGUGUaCGAgaACGGCgauggugugugCCGCCa -3'
miRNA:   3'- cgaACGCACGaGCUg-UGCCGa----------GGUGG- -5'
24850 3' -55.8 NC_005284.1 + 10049 0.66 0.681251
Target:  5'- cGCUUGCcacgcagGCUCGugagcgagcggaacGCGCGGCgaCCGCg -3'
miRNA:   3'- -CGAACGca-----CGAGC--------------UGUGCCGa-GGUGg -5'
24850 3' -55.8 NC_005284.1 + 21165 0.66 0.678004
Target:  5'- cGCgcGCG-GCUCGAgcaACGGCUCaucgagcacgcggaGCCg -3'
miRNA:   3'- -CGaaCGCaCGAGCUg--UGCCGAGg-------------UGG- -5'
24850 3' -55.8 NC_005284.1 + 33261 0.66 0.673668
Target:  5'- --gUGCGccgaucaggUGCUCGACGCaaGCgccggCCGCCa -3'
miRNA:   3'- cgaACGC---------ACGAGCUGUGc-CGa----GGUGG- -5'
24850 3' -55.8 NC_005284.1 + 44888 0.67 0.662804
Target:  5'- cGCgaGCGacGCuUCGGCGCGcugaGCUCCugCu -3'
miRNA:   3'- -CGaaCGCa-CG-AGCUGUGC----CGAGGugG- -5'
24850 3' -55.8 NC_005284.1 + 16504 0.67 0.662804
Target:  5'- uGCUcGaCGUGauCUCGGCGgGGC-CCAUCg -3'
miRNA:   3'- -CGAaC-GCAC--GAGCUGUgCCGaGGUGG- -5'
24850 3' -55.8 NC_005284.1 + 12061 0.67 0.661715
Target:  5'- gGCgcgUGCGgcgaugucucaggUGUUCGGagcgauCGGCUCCGCUu -3'
miRNA:   3'- -CGa--ACGC-------------ACGAGCUgu----GCCGAGGUGG- -5'
24850 3' -55.8 NC_005284.1 + 31917 0.67 0.651911
Target:  5'- aGCUcGCGgcGCUCGACGCcuucCCGCCg -3'
miRNA:   3'- -CGAaCGCa-CGAGCUGUGccgaGGUGG- -5'
24850 3' -55.8 NC_005284.1 + 15349 0.67 0.641
Target:  5'- cGCUcgGCGUGCa-GGCcgAUGGCUCgAUCg -3'
miRNA:   3'- -CGAa-CGCACGagCUG--UGCCGAGgUGG- -5'
24850 3' -55.8 NC_005284.1 + 30979 0.67 0.630082
Target:  5'- gGCUggucgGCGUaGUUCGAacUGGCgcuugCCGCCg -3'
miRNA:   3'- -CGAa----CGCA-CGAGCUguGCCGa----GGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.