Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24850 | 3' | -55.8 | NC_005284.1 | + | 10049 | 0.66 | 0.681251 |
Target: 5'- cGCUUGCcacgcagGCUCGugagcgagcggaacGCGCGGCgaCCGCg -3' miRNA: 3'- -CGAACGca-----CGAGC--------------UGUGCCGa-GGUGg -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 33261 | 0.66 | 0.673668 |
Target: 5'- --gUGCGccgaucaggUGCUCGACGCaaGCgccggCCGCCa -3' miRNA: 3'- cgaACGC---------ACGAGCUGUGc-CGa----GGUGG- -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 21727 | 0.66 | 0.684494 |
Target: 5'- --aUGCGUGUaCGAgaACGGCgauggugugugCCGCCa -3' miRNA: 3'- cgaACGCACGaGCUg-UGCCGa----------GGUGG- -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 29258 | 0.66 | 0.695271 |
Target: 5'- aGCgacGCGcGCaCGACgACGGCcgcuccgauUCCACCg -3' miRNA: 3'- -CGaa-CGCaCGaGCUG-UGCCG---------AGGUGG- -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 39128 | 0.66 | 0.695271 |
Target: 5'- cGCccGCGUGaUUCGGCACGccGUUCUugCu -3' miRNA: 3'- -CGaaCGCAC-GAGCUGUGC--CGAGGugG- -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 39515 | 0.66 | 0.716633 |
Target: 5'- uGCaUGUgGUGCUCGcCGCGGCcgaugugcUUCAUCg -3' miRNA: 3'- -CGaACG-CACGAGCuGUGCCG--------AGGUGG- -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 49338 | 0.66 | 0.710255 |
Target: 5'- gGCacGCGUGCgcgacgaccgaacuaUCGGuCGCaGCUUCGCCg -3' miRNA: 3'- -CGaaCGCACG---------------AGCU-GUGcCGAGGUGG- -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 31615 | 0.66 | 0.705988 |
Target: 5'- cCUUGgGUGCgggCGGCGucgagGGCgcauUCCACCu -3' miRNA: 3'- cGAACgCACGa--GCUGUg----CCG----AGGUGG- -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 21165 | 0.66 | 0.678004 |
Target: 5'- cGCgcGCG-GCUCGAgcaACGGCUCaucgagcacgcggaGCCg -3' miRNA: 3'- -CGaaCGCaCGAGCUg--UGCCGAGg-------------UGG- -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 47823 | 0.66 | 0.692044 |
Target: 5'- cGCUgcgaUGgGUGCUCGGCauugacgacGCGGaaagcgcacaggaggCCACCg -3' miRNA: 3'- -CGA----ACgCACGAGCUG---------UGCCga-------------GGUGG- -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 33975 | 0.66 | 0.694196 |
Target: 5'- cGCUgcUGCGggcUGCUCGACaggggguGCGGCgaggGCCg -3' miRNA: 3'- -CGA--ACGC---ACGAGCUG-------UGCCGagg-UGG- -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 51396 | 0.66 | 0.695271 |
Target: 5'- ---aGCGgGCUCGACGCGGCg----- -3' miRNA: 3'- cgaaCGCaCGAGCUGUGCCGaggugg -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 20409 | 0.66 | 0.695271 |
Target: 5'- ---cGUGUGCUCGACGUGGUucaggaugUCUACa -3' miRNA: 3'- cgaaCGCACGAGCUGUGCCG--------AGGUGg -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 9691 | 0.66 | 0.695271 |
Target: 5'- cCUUGCGaUGCagUCGGCAUugacggcuGGCUCgAUCa -3' miRNA: 3'- cGAACGC-ACG--AGCUGUG--------CCGAGgUGG- -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 16504 | 0.67 | 0.662804 |
Target: 5'- uGCUcGaCGUGauCUCGGCGgGGC-CCAUCg -3' miRNA: 3'- -CGAaC-GCAC--GAGCUGUgCCGaGGUGG- -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 12061 | 0.67 | 0.661715 |
Target: 5'- gGCgcgUGCGgcgaugucucaggUGUUCGGagcgauCGGCUCCGCUu -3' miRNA: 3'- -CGa--ACGC-------------ACGAGCUgu----GCCGAGGUGG- -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 15349 | 0.67 | 0.641 |
Target: 5'- cGCUcgGCGUGCa-GGCcgAUGGCUCgAUCg -3' miRNA: 3'- -CGAa-CGCACGagCUG--UGCCGAGgUGG- -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 30979 | 0.67 | 0.630082 |
Target: 5'- gGCUggucgGCGUaGUUCGAacUGGCgcuugCCGCCg -3' miRNA: 3'- -CGAa----CGCA-CGAGCUguGCCGa----GGUGG- -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 42515 | 0.67 | 0.62899 |
Target: 5'- cCUUGCGggagcguUGCUCGuugcgaucguCGCGGCuuaUCCGCUg -3' miRNA: 3'- cGAACGC-------ACGAGCu---------GUGCCG---AGGUGG- -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 31771 | 0.67 | 0.608259 |
Target: 5'- aGCUUGuCGUcauccgucacCUCGgaGCGCGGCUCCGgCu -3' miRNA: 3'- -CGAAC-GCAc---------GAGC--UGUGCCGAGGUgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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