miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24850 3' -55.8 NC_005284.1 + 31562 1.14 0.000405
Target:  5'- uGCUUGCGUGCUCGACACGGCUCCACCg -3'
miRNA:   3'- -CGAACGCACGAGCUGUGCCGAGGUGG- -5'
24850 3' -55.8 NC_005284.1 + 6987 0.75 0.248644
Target:  5'- cGCguacaugGCGcGCUCGACAUGGCgcUCGCCg -3'
miRNA:   3'- -CGaa-----CGCaCGAGCUGUGCCGa-GGUGG- -5'
24850 3' -55.8 NC_005284.1 + 8715 0.74 0.268385
Target:  5'- ---cGCGcGCUCGACGCGGCgcgcaguucgaUCCGCg -3'
miRNA:   3'- cgaaCGCaCGAGCUGUGCCG-----------AGGUGg -5'
24850 3' -55.8 NC_005284.1 + 47476 0.73 0.296646
Target:  5'- gGCUcGCaUGCUCGACGuCGGC-CaCACCg -3'
miRNA:   3'- -CGAaCGcACGAGCUGU-GCCGaG-GUGG- -5'
24850 3' -55.8 NC_005284.1 + 41790 0.72 0.367637
Target:  5'- uCUUGaUGUGCgCGACGCGGUUguugucgCCGCCa -3'
miRNA:   3'- cGAAC-GCACGaGCUGUGCCGA-------GGUGG- -5'
24850 3' -55.8 NC_005284.1 + 22620 0.7 0.441696
Target:  5'- ---aGCG-GCUCGAUugGGCgaCCugCa -3'
miRNA:   3'- cgaaCGCaCGAGCUGugCCGa-GGugG- -5'
24850 3' -55.8 NC_005284.1 + 39734 0.7 0.451414
Target:  5'- cUUUGCG-GCUUGGCucacgauCGGCUCCuagACCu -3'
miRNA:   3'- cGAACGCaCGAGCUGu------GCCGAGG---UGG- -5'
24850 3' -55.8 NC_005284.1 + 12650 0.7 0.468199
Target:  5'- cGC-UGCGUGUgcgcaaagcccaguUCGGCgACGGCUaCACCc -3'
miRNA:   3'- -CGaACGCACG--------------AGCUG-UGCCGAgGUGG- -5'
24850 3' -55.8 NC_005284.1 + 36520 0.7 0.471194
Target:  5'- ---gGCGgacGUUCGACggcgGCGGCUgCACCg -3'
miRNA:   3'- cgaaCGCa--CGAGCUG----UGCCGAgGUGG- -5'
24850 3' -55.8 NC_005284.1 + 21499 0.7 0.481248
Target:  5'- ---cGCGcUGCUUGGCAUGGCggCCGgCg -3'
miRNA:   3'- cgaaCGC-ACGAGCUGUGCCGa-GGUgG- -5'
24850 3' -55.8 NC_005284.1 + 33584 0.7 0.481248
Target:  5'- aGCcggGCGUGCacgUCagGAC-CGGCUCCGCg -3'
miRNA:   3'- -CGaa-CGCACG---AG--CUGuGCCGAGGUGg -5'
24850 3' -55.8 NC_005284.1 + 1618 0.69 0.491404
Target:  5'- -aUUGCGUgcucgcGCUCGACAUGGCg-CGCa -3'
miRNA:   3'- cgAACGCA------CGAGCUGUGCCGagGUGg -5'
24850 3' -55.8 NC_005284.1 + 39664 0.69 0.495495
Target:  5'- cGCUUGCaacuucgcgcaacagGUGCUCGACAa-GCgcgCCGCg -3'
miRNA:   3'- -CGAACG---------------CACGAGCUGUgcCGa--GGUGg -5'
24850 3' -55.8 NC_005284.1 + 426 0.69 0.512007
Target:  5'- -----gGUGCUUG-CACGGCUUCAUCg -3'
miRNA:   3'- cgaacgCACGAGCuGUGCCGAGGUGG- -5'
24850 3' -55.8 NC_005284.1 + 39907 0.69 0.512007
Target:  5'- cGUUUGCGcUGaCUCGAgGuCGGCUgCugCg -3'
miRNA:   3'- -CGAACGC-AC-GAGCUgU-GCCGAgGugG- -5'
24850 3' -55.8 NC_005284.1 + 48833 0.69 0.512007
Target:  5'- ---cGCGUGgCUCGACugGuGCgagCACCg -3'
miRNA:   3'- cgaaCGCAC-GAGCUGugC-CGag-GUGG- -5'
24850 3' -55.8 NC_005284.1 + 46480 0.69 0.522442
Target:  5'- cGCUgGCGUuagcuGCUCGuGCAUGGCcgaCGCCg -3'
miRNA:   3'- -CGAaCGCA-----CGAGC-UGUGCCGag-GUGG- -5'
24850 3' -55.8 NC_005284.1 + 13163 0.69 0.522442
Target:  5'- aGCUcuccgaUGCGUGUcggagcucgcacUCGGCGCGGCcUCGCg -3'
miRNA:   3'- -CGA------ACGCACG------------AGCUGUGCCGaGGUGg -5'
24850 3' -55.8 NC_005284.1 + 15460 0.69 0.528742
Target:  5'- uGCgaGCGUGCugcgcuUCGugACGGauucaagaucgaaUCCGCCu -3'
miRNA:   3'- -CGaaCGCACG------AGCugUGCCg------------AGGUGG- -5'
24850 3' -55.8 NC_005284.1 + 21818 0.68 0.554206
Target:  5'- gGCgacgGCGUGCcCGGCGCuuccaGCgCCGCCg -3'
miRNA:   3'- -CGaa--CGCACGaGCUGUGc----CGaGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.