Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24850 | 3' | -55.8 | NC_005284.1 | + | 42515 | 0.67 | 0.62899 |
Target: 5'- cCUUGCGggagcguUGCUCGuugcgaucguCGCGGCuuaUCCGCUg -3' miRNA: 3'- cGAACGC-------ACGAGCu---------GUGCCG---AGGUGG- -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 31771 | 0.67 | 0.608259 |
Target: 5'- aGCUUGuCGUcauccgucacCUCGgaGCGCGGCUCCGgCu -3' miRNA: 3'- -CGAAC-GCAc---------GAGC--UGUGCCGAGGUgG- -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 44446 | 0.68 | 0.586517 |
Target: 5'- ---cGCGUGauCUCGACGCcGCUUCGCa -3' miRNA: 3'- cgaaCGCAC--GAGCUGUGcCGAGGUGg -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 4275 | 0.68 | 0.564926 |
Target: 5'- uGCUUcgGCGUGC-CGACcCGGUucugaucgaUCCACg -3' miRNA: 3'- -CGAA--CGCACGaGCUGuGCCG---------AGGUGg -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 21818 | 0.68 | 0.554206 |
Target: 5'- gGCgacgGCGUGCcCGGCGCuuccaGCgCCGCCg -3' miRNA: 3'- -CGaa--CGCACGaGCUGUGc----CGaGGUGG- -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 46505 | 0.68 | 0.554206 |
Target: 5'- aGCUcgGCGgacgacaucUGCUCG-CACaGCUCgGCCa -3' miRNA: 3'- -CGAa-CGC---------ACGAGCuGUGcCGAGgUGG- -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 15460 | 0.69 | 0.528742 |
Target: 5'- uGCgaGCGUGCugcgcuUCGugACGGauucaagaucgaaUCCGCCu -3' miRNA: 3'- -CGaaCGCACG------AGCugUGCCg------------AGGUGG- -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 13163 | 0.69 | 0.522442 |
Target: 5'- aGCUcuccgaUGCGUGUcggagcucgcacUCGGCGCGGCcUCGCg -3' miRNA: 3'- -CGA------ACGCACG------------AGCUGUGCCGaGGUGg -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 46480 | 0.69 | 0.522442 |
Target: 5'- cGCUgGCGUuagcuGCUCGuGCAUGGCcgaCGCCg -3' miRNA: 3'- -CGAaCGCA-----CGAGC-UGUGCCGag-GUGG- -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 39907 | 0.69 | 0.512007 |
Target: 5'- cGUUUGCGcUGaCUCGAgGuCGGCUgCugCg -3' miRNA: 3'- -CGAACGC-AC-GAGCUgU-GCCGAgGugG- -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 48833 | 0.69 | 0.512007 |
Target: 5'- ---cGCGUGgCUCGACugGuGCgagCACCg -3' miRNA: 3'- cgaaCGCAC-GAGCUGugC-CGag-GUGG- -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 426 | 0.69 | 0.512007 |
Target: 5'- -----gGUGCUUG-CACGGCUUCAUCg -3' miRNA: 3'- cgaacgCACGAGCuGUGCCGAGGUGG- -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 39664 | 0.69 | 0.495495 |
Target: 5'- cGCUUGCaacuucgcgcaacagGUGCUCGACAa-GCgcgCCGCg -3' miRNA: 3'- -CGAACG---------------CACGAGCUGUgcCGa--GGUGg -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 1618 | 0.69 | 0.491404 |
Target: 5'- -aUUGCGUgcucgcGCUCGACAUGGCg-CGCa -3' miRNA: 3'- cgAACGCA------CGAGCUGUGCCGagGUGg -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 21499 | 0.7 | 0.481248 |
Target: 5'- ---cGCGcUGCUUGGCAUGGCggCCGgCg -3' miRNA: 3'- cgaaCGC-ACGAGCUGUGCCGa-GGUgG- -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 33584 | 0.7 | 0.481248 |
Target: 5'- aGCcggGCGUGCacgUCagGAC-CGGCUCCGCg -3' miRNA: 3'- -CGaa-CGCACG---AG--CUGuGCCGAGGUGg -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 36520 | 0.7 | 0.471194 |
Target: 5'- ---gGCGgacGUUCGACggcgGCGGCUgCACCg -3' miRNA: 3'- cgaaCGCa--CGAGCUG----UGCCGAgGUGG- -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 12650 | 0.7 | 0.468199 |
Target: 5'- cGC-UGCGUGUgcgcaaagcccaguUCGGCgACGGCUaCACCc -3' miRNA: 3'- -CGaACGCACG--------------AGCUG-UGCCGAgGUGG- -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 39734 | 0.7 | 0.451414 |
Target: 5'- cUUUGCG-GCUUGGCucacgauCGGCUCCuagACCu -3' miRNA: 3'- cGAACGCaCGAGCUGu------GCCGAGG---UGG- -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 22620 | 0.7 | 0.441696 |
Target: 5'- ---aGCG-GCUCGAUugGGCgaCCugCa -3' miRNA: 3'- cgaaCGCaCGAGCUGugCCGa-GGugG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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