miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24850 3' -55.8 NC_005284.1 + 426 0.69 0.512007
Target:  5'- -----gGUGCUUG-CACGGCUUCAUCg -3'
miRNA:   3'- cgaacgCACGAGCuGUGCCGAGGUGG- -5'
24850 3' -55.8 NC_005284.1 + 1618 0.69 0.491404
Target:  5'- -aUUGCGUgcucgcGCUCGACAUGGCg-CGCa -3'
miRNA:   3'- cgAACGCA------CGAGCUGUGCCGagGUGg -5'
24850 3' -55.8 NC_005284.1 + 4275 0.68 0.564926
Target:  5'- uGCUUcgGCGUGC-CGACcCGGUucugaucgaUCCACg -3'
miRNA:   3'- -CGAA--CGCACGaGCUGuGCCG---------AGGUGg -5'
24850 3' -55.8 NC_005284.1 + 6987 0.75 0.248644
Target:  5'- cGCguacaugGCGcGCUCGACAUGGCgcUCGCCg -3'
miRNA:   3'- -CGaa-----CGCaCGAGCUGUGCCGa-GGUGG- -5'
24850 3' -55.8 NC_005284.1 + 8715 0.74 0.268385
Target:  5'- ---cGCGcGCUCGACGCGGCgcgcaguucgaUCCGCg -3'
miRNA:   3'- cgaaCGCaCGAGCUGUGCCG-----------AGGUGg -5'
24850 3' -55.8 NC_005284.1 + 9691 0.66 0.695271
Target:  5'- cCUUGCGaUGCagUCGGCAUugacggcuGGCUCgAUCa -3'
miRNA:   3'- cGAACGC-ACG--AGCUGUG--------CCGAGgUGG- -5'
24850 3' -55.8 NC_005284.1 + 10049 0.66 0.681251
Target:  5'- cGCUUGCcacgcagGCUCGugagcgagcggaacGCGCGGCgaCCGCg -3'
miRNA:   3'- -CGAACGca-----CGAGC--------------UGUGCCGa-GGUGg -5'
24850 3' -55.8 NC_005284.1 + 12061 0.67 0.661715
Target:  5'- gGCgcgUGCGgcgaugucucaggUGUUCGGagcgauCGGCUCCGCUu -3'
miRNA:   3'- -CGa--ACGC-------------ACGAGCUgu----GCCGAGGUGG- -5'
24850 3' -55.8 NC_005284.1 + 12650 0.7 0.468199
Target:  5'- cGC-UGCGUGUgcgcaaagcccaguUCGGCgACGGCUaCACCc -3'
miRNA:   3'- -CGaACGCACG--------------AGCUG-UGCCGAgGUGG- -5'
24850 3' -55.8 NC_005284.1 + 13163 0.69 0.522442
Target:  5'- aGCUcuccgaUGCGUGUcggagcucgcacUCGGCGCGGCcUCGCg -3'
miRNA:   3'- -CGA------ACGCACG------------AGCUGUGCCGaGGUGg -5'
24850 3' -55.8 NC_005284.1 + 15349 0.67 0.641
Target:  5'- cGCUcgGCGUGCa-GGCcgAUGGCUCgAUCg -3'
miRNA:   3'- -CGAa-CGCACGagCUG--UGCCGAGgUGG- -5'
24850 3' -55.8 NC_005284.1 + 15460 0.69 0.528742
Target:  5'- uGCgaGCGUGCugcgcuUCGugACGGauucaagaucgaaUCCGCCu -3'
miRNA:   3'- -CGaaCGCACG------AGCugUGCCg------------AGGUGG- -5'
24850 3' -55.8 NC_005284.1 + 16504 0.67 0.662804
Target:  5'- uGCUcGaCGUGauCUCGGCGgGGC-CCAUCg -3'
miRNA:   3'- -CGAaC-GCAC--GAGCUGUgCCGaGGUGG- -5'
24850 3' -55.8 NC_005284.1 + 20409 0.66 0.695271
Target:  5'- ---cGUGUGCUCGACGUGGUucaggaugUCUACa -3'
miRNA:   3'- cgaaCGCACGAGCUGUGCCG--------AGGUGg -5'
24850 3' -55.8 NC_005284.1 + 21165 0.66 0.678004
Target:  5'- cGCgcGCG-GCUCGAgcaACGGCUCaucgagcacgcggaGCCg -3'
miRNA:   3'- -CGaaCGCaCGAGCUg--UGCCGAGg-------------UGG- -5'
24850 3' -55.8 NC_005284.1 + 21499 0.7 0.481248
Target:  5'- ---cGCGcUGCUUGGCAUGGCggCCGgCg -3'
miRNA:   3'- cgaaCGC-ACGAGCUGUGCCGa-GGUgG- -5'
24850 3' -55.8 NC_005284.1 + 21727 0.66 0.684494
Target:  5'- --aUGCGUGUaCGAgaACGGCgauggugugugCCGCCa -3'
miRNA:   3'- cgaACGCACGaGCUg-UGCCGa----------GGUGG- -5'
24850 3' -55.8 NC_005284.1 + 21818 0.68 0.554206
Target:  5'- gGCgacgGCGUGCcCGGCGCuuccaGCgCCGCCg -3'
miRNA:   3'- -CGaa--CGCACGaGCUGUGc----CGaGGUGG- -5'
24850 3' -55.8 NC_005284.1 + 22620 0.7 0.441696
Target:  5'- ---aGCG-GCUCGAUugGGCgaCCugCa -3'
miRNA:   3'- cgaaCGCaCGAGCUGugCCGa-GGugG- -5'
24850 3' -55.8 NC_005284.1 + 29258 0.66 0.695271
Target:  5'- aGCgacGCGcGCaCGACgACGGCcgcuccgauUCCACCg -3'
miRNA:   3'- -CGaa-CGCaCGaGCUG-UGCCG---------AGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.