miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24850 3' -55.8 NC_005284.1 + 30979 0.67 0.630082
Target:  5'- gGCUggucgGCGUaGUUCGAacUGGCgcuugCCGCCg -3'
miRNA:   3'- -CGAa----CGCA-CGAGCUguGCCGa----GGUGG- -5'
24850 3' -55.8 NC_005284.1 + 31562 1.14 0.000405
Target:  5'- uGCUUGCGUGCUCGACACGGCUCCACCg -3'
miRNA:   3'- -CGAACGCACGAGCUGUGCCGAGGUGG- -5'
24850 3' -55.8 NC_005284.1 + 31615 0.66 0.705988
Target:  5'- cCUUGgGUGCgggCGGCGucgagGGCgcauUCCACCu -3'
miRNA:   3'- cGAACgCACGa--GCUGUg----CCG----AGGUGG- -5'
24850 3' -55.8 NC_005284.1 + 31771 0.67 0.608259
Target:  5'- aGCUUGuCGUcauccgucacCUCGgaGCGCGGCUCCGgCu -3'
miRNA:   3'- -CGAAC-GCAc---------GAGC--UGUGCCGAGGUgG- -5'
24850 3' -55.8 NC_005284.1 + 31917 0.67 0.651911
Target:  5'- aGCUcGCGgcGCUCGACGCcuucCCGCCg -3'
miRNA:   3'- -CGAaCGCa-CGAGCUGUGccgaGGUGG- -5'
24850 3' -55.8 NC_005284.1 + 33261 0.66 0.673668
Target:  5'- --gUGCGccgaucaggUGCUCGACGCaaGCgccggCCGCCa -3'
miRNA:   3'- cgaACGC---------ACGAGCUGUGc-CGa----GGUGG- -5'
24850 3' -55.8 NC_005284.1 + 33584 0.7 0.481248
Target:  5'- aGCcggGCGUGCacgUCagGAC-CGGCUCCGCg -3'
miRNA:   3'- -CGaa-CGCACG---AG--CUGuGCCGAGGUGg -5'
24850 3' -55.8 NC_005284.1 + 33975 0.66 0.694196
Target:  5'- cGCUgcUGCGggcUGCUCGACaggggguGCGGCgaggGCCg -3'
miRNA:   3'- -CGA--ACGC---ACGAGCUG-------UGCCGagg-UGG- -5'
24850 3' -55.8 NC_005284.1 + 36520 0.7 0.471194
Target:  5'- ---gGCGgacGUUCGACggcgGCGGCUgCACCg -3'
miRNA:   3'- cgaaCGCa--CGAGCUG----UGCCGAgGUGG- -5'
24850 3' -55.8 NC_005284.1 + 39128 0.66 0.695271
Target:  5'- cGCccGCGUGaUUCGGCACGccGUUCUugCu -3'
miRNA:   3'- -CGaaCGCAC-GAGCUGUGC--CGAGGugG- -5'
24850 3' -55.8 NC_005284.1 + 39515 0.66 0.716633
Target:  5'- uGCaUGUgGUGCUCGcCGCGGCcgaugugcUUCAUCg -3'
miRNA:   3'- -CGaACG-CACGAGCuGUGCCG--------AGGUGG- -5'
24850 3' -55.8 NC_005284.1 + 39664 0.69 0.495495
Target:  5'- cGCUUGCaacuucgcgcaacagGUGCUCGACAa-GCgcgCCGCg -3'
miRNA:   3'- -CGAACG---------------CACGAGCUGUgcCGa--GGUGg -5'
24850 3' -55.8 NC_005284.1 + 39734 0.7 0.451414
Target:  5'- cUUUGCG-GCUUGGCucacgauCGGCUCCuagACCu -3'
miRNA:   3'- cGAACGCaCGAGCUGu------GCCGAGG---UGG- -5'
24850 3' -55.8 NC_005284.1 + 39907 0.69 0.512007
Target:  5'- cGUUUGCGcUGaCUCGAgGuCGGCUgCugCg -3'
miRNA:   3'- -CGAACGC-AC-GAGCUgU-GCCGAgGugG- -5'
24850 3' -55.8 NC_005284.1 + 41790 0.72 0.367637
Target:  5'- uCUUGaUGUGCgCGACGCGGUUguugucgCCGCCa -3'
miRNA:   3'- cGAAC-GCACGaGCUGUGCCGA-------GGUGG- -5'
24850 3' -55.8 NC_005284.1 + 42515 0.67 0.62899
Target:  5'- cCUUGCGggagcguUGCUCGuugcgaucguCGCGGCuuaUCCGCUg -3'
miRNA:   3'- cGAACGC-------ACGAGCu---------GUGCCG---AGGUGG- -5'
24850 3' -55.8 NC_005284.1 + 44446 0.68 0.586517
Target:  5'- ---cGCGUGauCUCGACGCcGCUUCGCa -3'
miRNA:   3'- cgaaCGCAC--GAGCUGUGcCGAGGUGg -5'
24850 3' -55.8 NC_005284.1 + 44888 0.67 0.662804
Target:  5'- cGCgaGCGacGCuUCGGCGCGcugaGCUCCugCu -3'
miRNA:   3'- -CGaaCGCa-CG-AGCUGUGC----CGAGGugG- -5'
24850 3' -55.8 NC_005284.1 + 46480 0.69 0.522442
Target:  5'- cGCUgGCGUuagcuGCUCGuGCAUGGCcgaCGCCg -3'
miRNA:   3'- -CGAaCGCA-----CGAGC-UGUGCCGag-GUGG- -5'
24850 3' -55.8 NC_005284.1 + 46505 0.68 0.554206
Target:  5'- aGCUcgGCGgacgacaucUGCUCG-CACaGCUCgGCCa -3'
miRNA:   3'- -CGAa-CGC---------ACGAGCuGUGcCGAGgUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.