Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24850 | 3' | -55.8 | NC_005284.1 | + | 51396 | 0.66 | 0.695271 |
Target: 5'- ---aGCGgGCUCGACGCGGCg----- -3' miRNA: 3'- cgaaCGCaCGAGCUGUGCCGaggugg -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 49338 | 0.66 | 0.710255 |
Target: 5'- gGCacGCGUGCgcgacgaccgaacuaUCGGuCGCaGCUUCGCCg -3' miRNA: 3'- -CGaaCGCACG---------------AGCU-GUGcCGAGGUGG- -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 48833 | 0.69 | 0.512007 |
Target: 5'- ---cGCGUGgCUCGACugGuGCgagCACCg -3' miRNA: 3'- cgaaCGCAC-GAGCUGugC-CGag-GUGG- -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 47823 | 0.66 | 0.692044 |
Target: 5'- cGCUgcgaUGgGUGCUCGGCauugacgacGCGGaaagcgcacaggaggCCACCg -3' miRNA: 3'- -CGA----ACgCACGAGCUG---------UGCCga-------------GGUGG- -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 47476 | 0.73 | 0.296646 |
Target: 5'- gGCUcGCaUGCUCGACGuCGGC-CaCACCg -3' miRNA: 3'- -CGAaCGcACGAGCUGU-GCCGaG-GUGG- -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 46505 | 0.68 | 0.554206 |
Target: 5'- aGCUcgGCGgacgacaucUGCUCG-CACaGCUCgGCCa -3' miRNA: 3'- -CGAa-CGC---------ACGAGCuGUGcCGAGgUGG- -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 46480 | 0.69 | 0.522442 |
Target: 5'- cGCUgGCGUuagcuGCUCGuGCAUGGCcgaCGCCg -3' miRNA: 3'- -CGAaCGCA-----CGAGC-UGUGCCGag-GUGG- -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 44888 | 0.67 | 0.662804 |
Target: 5'- cGCgaGCGacGCuUCGGCGCGcugaGCUCCugCu -3' miRNA: 3'- -CGaaCGCa-CG-AGCUGUGC----CGAGGugG- -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 44446 | 0.68 | 0.586517 |
Target: 5'- ---cGCGUGauCUCGACGCcGCUUCGCa -3' miRNA: 3'- cgaaCGCAC--GAGCUGUGcCGAGGUGg -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 42515 | 0.67 | 0.62899 |
Target: 5'- cCUUGCGggagcguUGCUCGuugcgaucguCGCGGCuuaUCCGCUg -3' miRNA: 3'- cGAACGC-------ACGAGCu---------GUGCCG---AGGUGG- -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 41790 | 0.72 | 0.367637 |
Target: 5'- uCUUGaUGUGCgCGACGCGGUUguugucgCCGCCa -3' miRNA: 3'- cGAAC-GCACGaGCUGUGCCGA-------GGUGG- -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 39907 | 0.69 | 0.512007 |
Target: 5'- cGUUUGCGcUGaCUCGAgGuCGGCUgCugCg -3' miRNA: 3'- -CGAACGC-AC-GAGCUgU-GCCGAgGugG- -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 39734 | 0.7 | 0.451414 |
Target: 5'- cUUUGCG-GCUUGGCucacgauCGGCUCCuagACCu -3' miRNA: 3'- cGAACGCaCGAGCUGu------GCCGAGG---UGG- -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 39664 | 0.69 | 0.495495 |
Target: 5'- cGCUUGCaacuucgcgcaacagGUGCUCGACAa-GCgcgCCGCg -3' miRNA: 3'- -CGAACG---------------CACGAGCUGUgcCGa--GGUGg -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 39515 | 0.66 | 0.716633 |
Target: 5'- uGCaUGUgGUGCUCGcCGCGGCcgaugugcUUCAUCg -3' miRNA: 3'- -CGaACG-CACGAGCuGUGCCG--------AGGUGG- -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 39128 | 0.66 | 0.695271 |
Target: 5'- cGCccGCGUGaUUCGGCACGccGUUCUugCu -3' miRNA: 3'- -CGaaCGCAC-GAGCUGUGC--CGAGGugG- -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 36520 | 0.7 | 0.471194 |
Target: 5'- ---gGCGgacGUUCGACggcgGCGGCUgCACCg -3' miRNA: 3'- cgaaCGCa--CGAGCUG----UGCCGAgGUGG- -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 33975 | 0.66 | 0.694196 |
Target: 5'- cGCUgcUGCGggcUGCUCGACaggggguGCGGCgaggGCCg -3' miRNA: 3'- -CGA--ACGC---ACGAGCUG-------UGCCGagg-UGG- -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 33584 | 0.7 | 0.481248 |
Target: 5'- aGCcggGCGUGCacgUCagGAC-CGGCUCCGCg -3' miRNA: 3'- -CGaa-CGCACG---AG--CUGuGCCGAGGUGg -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 33261 | 0.66 | 0.673668 |
Target: 5'- --gUGCGccgaucaggUGCUCGACGCaaGCgccggCCGCCa -3' miRNA: 3'- cgaACGC---------ACGAGCUGUGc-CGa----GGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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