miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24850 3' -55.8 NC_005284.1 + 21165 0.66 0.678004
Target:  5'- cGCgcGCG-GCUCGAgcaACGGCUCaucgagcacgcggaGCCg -3'
miRNA:   3'- -CGaaCGCaCGAGCUg--UGCCGAGg-------------UGG- -5'
24850 3' -55.8 NC_005284.1 + 21818 0.68 0.554206
Target:  5'- gGCgacgGCGUGCcCGGCGCuuccaGCgCCGCCg -3'
miRNA:   3'- -CGaa--CGCACGaGCUGUGc----CGaGGUGG- -5'
24850 3' -55.8 NC_005284.1 + 44446 0.68 0.586517
Target:  5'- ---cGCGUGauCUCGACGCcGCUUCGCa -3'
miRNA:   3'- cgaaCGCAC--GAGCUGUGcCGAGGUGg -5'
24850 3' -55.8 NC_005284.1 + 31771 0.67 0.608259
Target:  5'- aGCUUGuCGUcauccgucacCUCGgaGCGCGGCUCCGgCu -3'
miRNA:   3'- -CGAAC-GCAc---------GAGC--UGUGCCGAGGUgG- -5'
24850 3' -55.8 NC_005284.1 + 42515 0.67 0.62899
Target:  5'- cCUUGCGggagcguUGCUCGuugcgaucguCGCGGCuuaUCCGCUg -3'
miRNA:   3'- cGAACGC-------ACGAGCu---------GUGCCG---AGGUGG- -5'
24850 3' -55.8 NC_005284.1 + 30979 0.67 0.630082
Target:  5'- gGCUggucgGCGUaGUUCGAacUGGCgcuugCCGCCg -3'
miRNA:   3'- -CGAa----CGCA-CGAGCUguGCCGa----GGUGG- -5'
24850 3' -55.8 NC_005284.1 + 15349 0.67 0.641
Target:  5'- cGCUcgGCGUGCa-GGCcgAUGGCUCgAUCg -3'
miRNA:   3'- -CGAa-CGCACGagCUG--UGCCGAGgUGG- -5'
24850 3' -55.8 NC_005284.1 + 12061 0.67 0.661715
Target:  5'- gGCgcgUGCGgcgaugucucaggUGUUCGGagcgauCGGCUCCGCUu -3'
miRNA:   3'- -CGa--ACGC-------------ACGAGCUgu----GCCGAGGUGG- -5'
24850 3' -55.8 NC_005284.1 + 16504 0.67 0.662804
Target:  5'- uGCUcGaCGUGauCUCGGCGgGGC-CCAUCg -3'
miRNA:   3'- -CGAaC-GCAC--GAGCUGUgCCGaGGUGG- -5'
24850 3' -55.8 NC_005284.1 + 46480 0.69 0.522442
Target:  5'- cGCUgGCGUuagcuGCUCGuGCAUGGCcgaCGCCg -3'
miRNA:   3'- -CGAaCGCA-----CGAGC-UGUGCCGag-GUGG- -5'
24850 3' -55.8 NC_005284.1 + 39907 0.69 0.512007
Target:  5'- cGUUUGCGcUGaCUCGAgGuCGGCUgCugCg -3'
miRNA:   3'- -CGAACGC-AC-GAGCUgU-GCCGAgGugG- -5'
24850 3' -55.8 NC_005284.1 + 48833 0.69 0.512007
Target:  5'- ---cGCGUGgCUCGACugGuGCgagCACCg -3'
miRNA:   3'- cgaaCGCAC-GAGCUGugC-CGag-GUGG- -5'
24850 3' -55.8 NC_005284.1 + 8715 0.74 0.268385
Target:  5'- ---cGCGcGCUCGACGCGGCgcgcaguucgaUCCGCg -3'
miRNA:   3'- cgaaCGCaCGAGCUGUGCCG-----------AGGUGg -5'
24850 3' -55.8 NC_005284.1 + 47476 0.73 0.296646
Target:  5'- gGCUcGCaUGCUCGACGuCGGC-CaCACCg -3'
miRNA:   3'- -CGAaCGcACGAGCUGU-GCCGaG-GUGG- -5'
24850 3' -55.8 NC_005284.1 + 22620 0.7 0.441696
Target:  5'- ---aGCG-GCUCGAUugGGCgaCCugCa -3'
miRNA:   3'- cgaaCGCaCGAGCUGugCCGa-GGugG- -5'
24850 3' -55.8 NC_005284.1 + 39734 0.7 0.451414
Target:  5'- cUUUGCG-GCUUGGCucacgauCGGCUCCuagACCu -3'
miRNA:   3'- cGAACGCaCGAGCUGu------GCCGAGG---UGG- -5'
24850 3' -55.8 NC_005284.1 + 12650 0.7 0.468199
Target:  5'- cGC-UGCGUGUgcgcaaagcccaguUCGGCgACGGCUaCACCc -3'
miRNA:   3'- -CGaACGCACG--------------AGCUG-UGCCGAgGUGG- -5'
24850 3' -55.8 NC_005284.1 + 21499 0.7 0.481248
Target:  5'- ---cGCGcUGCUUGGCAUGGCggCCGgCg -3'
miRNA:   3'- cgaaCGC-ACGAGCUGUGCCGa-GGUgG- -5'
24850 3' -55.8 NC_005284.1 + 1618 0.69 0.491404
Target:  5'- -aUUGCGUgcucgcGCUCGACAUGGCg-CGCa -3'
miRNA:   3'- cgAACGCA------CGAGCUGUGCCGagGUGg -5'
24850 3' -55.8 NC_005284.1 + 39664 0.69 0.495495
Target:  5'- cGCUUGCaacuucgcgcaacagGUGCUCGACAa-GCgcgCCGCg -3'
miRNA:   3'- -CGAACG---------------CACGAGCUGUgcCGa--GGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.