Results 41 - 45 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24850 | 3' | -55.8 | NC_005284.1 | + | 33261 | 0.66 | 0.673668 |
Target: 5'- --gUGCGccgaucaggUGCUCGACGCaaGCgccggCCGCCa -3' miRNA: 3'- cgaACGC---------ACGAGCUGUGc-CGa----GGUGG- -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 21727 | 0.66 | 0.684494 |
Target: 5'- --aUGCGUGUaCGAgaACGGCgauggugugugCCGCCa -3' miRNA: 3'- cgaACGCACGaGCUg-UGCCGa----------GGUGG- -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 29258 | 0.66 | 0.695271 |
Target: 5'- aGCgacGCGcGCaCGACgACGGCcgcuccgauUCCACCg -3' miRNA: 3'- -CGaa-CGCaCGaGCUG-UGCCG---------AGGUGG- -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 39128 | 0.66 | 0.695271 |
Target: 5'- cGCccGCGUGaUUCGGCACGccGUUCUugCu -3' miRNA: 3'- -CGaaCGCAC-GAGCUGUGC--CGAGGugG- -5' |
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24850 | 3' | -55.8 | NC_005284.1 | + | 31562 | 1.14 | 0.000405 |
Target: 5'- uGCUUGCGUGCUCGACACGGCUCCACCg -3' miRNA: 3'- -CGAACGCACGAGCUGUGCCGAGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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