miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24851 5' -52.6 NC_005284.1 + 988 0.65 0.875886
Target:  5'- aAGCAGGccuggaggucuuucGCCCGgCGCGgcugaUGGUGAAgCg -3'
miRNA:   3'- -UCGUUU--------------UGGGCgGCGCa----GCUACUUgG- -5'
24851 5' -52.6 NC_005284.1 + 46681 0.66 0.870325
Target:  5'- gGGCcGAACgCCGCCGCGaccgCGGuUGcAUCg -3'
miRNA:   3'- -UCGuUUUG-GGCGGCGCa---GCU-ACuUGG- -5'
24851 5' -52.6 NC_005284.1 + 11344 0.66 0.870325
Target:  5'- uAGCAAAACaCUuCCGgGUUGAuuUGAACg -3'
miRNA:   3'- -UCGUUUUG-GGcGGCgCAGCU--ACUUGg -5'
24851 5' -52.6 NC_005284.1 + 40262 0.66 0.870325
Target:  5'- cGCcc-ACCCGCaGCGUCGgcGAugGCUg -3'
miRNA:   3'- uCGuuuUGGGCGgCGCAGCuaCU--UGG- -5'
24851 5' -52.6 NC_005284.1 + 11237 0.66 0.870325
Target:  5'- gGGCGAAACCCGUccggaccuugcgCGCGcuaUCGGcaucGAAUCa -3'
miRNA:   3'- -UCGUUUUGGGCG------------GCGC---AGCUa---CUUGG- -5'
24851 5' -52.6 NC_005284.1 + 4472 0.66 0.870325
Target:  5'- gAGCAAAagcugGCUCGCgGCGgCGGUaGcGCCg -3'
miRNA:   3'- -UCGUUU-----UGGGCGgCGCaGCUA-CuUGG- -5'
24851 5' -52.6 NC_005284.1 + 16519 0.66 0.870325
Target:  5'- cGGCGGGGCCCaUCGUGgggcUGGUGAaugGCCu -3'
miRNA:   3'- -UCGUUUUGGGcGGCGCa---GCUACU---UGG- -5'
24851 5' -52.6 NC_005284.1 + 21401 0.66 0.862167
Target:  5'- cGGuCGAGugCUGCCGgGUCucGUGAaacGCCg -3'
miRNA:   3'- -UC-GUUUugGGCGGCgCAGc-UACU---UGG- -5'
24851 5' -52.6 NC_005284.1 + 24937 0.66 0.862167
Target:  5'- cGCAGAuCCCuCCGCGcCGAUcAugCg -3'
miRNA:   3'- uCGUUUuGGGcGGCGCaGCUAcUugG- -5'
24851 5' -52.6 NC_005284.1 + 42110 0.66 0.862167
Target:  5'- cGCG--GCCCGCUGgguguagcCGUCGccGAACUg -3'
miRNA:   3'- uCGUuuUGGGCGGC--------GCAGCuaCUUGG- -5'
24851 5' -52.6 NC_005284.1 + 26399 0.66 0.862167
Target:  5'- cAGCGugGCUgCGCCGCuUCGAggUGGGCg -3'
miRNA:   3'- -UCGUuuUGG-GCGGCGcAGCU--ACUUGg -5'
24851 5' -52.6 NC_005284.1 + 28849 0.66 0.853762
Target:  5'- cGGCGAAGCCCGCC-UGaCcuUGAACg -3'
miRNA:   3'- -UCGUUUUGGGCGGcGCaGcuACUUGg -5'
24851 5' -52.6 NC_005284.1 + 45549 0.66 0.853762
Target:  5'- uGCc--GCCCGCCGCGcgcgucagcgccUCGAcGAgauuACCg -3'
miRNA:   3'- uCGuuuUGGGCGGCGC------------AGCUaCU----UGG- -5'
24851 5' -52.6 NC_005284.1 + 36904 0.66 0.853762
Target:  5'- cGCGGAugcGCCCGCCGa-UCcg-GGGCCg -3'
miRNA:   3'- uCGUUU---UGGGCGGCgcAGcuaCUUGG- -5'
24851 5' -52.6 NC_005284.1 + 17473 0.66 0.853762
Target:  5'- cGGCAuuucguACUggggCGCCGgGUCGGUGGucgcgucgGCCg -3'
miRNA:   3'- -UCGUuu----UGG----GCGGCgCAGCUACU--------UGG- -5'
24851 5' -52.6 NC_005284.1 + 27603 0.66 0.853762
Target:  5'- gGGCAAAGCgCCGCCgauuauGCGUagcacaAUGAACg -3'
miRNA:   3'- -UCGUUUUG-GGCGG------CGCAgc----UACUUGg -5'
24851 5' -52.6 NC_005284.1 + 29018 0.66 0.853762
Target:  5'- uGCAGAAaaaUG-CGCGUCGGUGAugUa -3'
miRNA:   3'- uCGUUUUgg-GCgGCGCAGCUACUugG- -5'
24851 5' -52.6 NC_005284.1 + 31350 0.66 0.836246
Target:  5'- cGCAGAACaCG-CGCuGUCGGUG-GCCg -3'
miRNA:   3'- uCGUUUUGgGCgGCG-CAGCUACuUGG- -5'
24851 5' -52.6 NC_005284.1 + 47345 0.66 0.836246
Target:  5'- cGCGAAcgUCGUCGCGUCGAUuucuuCCg -3'
miRNA:   3'- uCGUUUugGGCGGCGCAGCUAcuu--GG- -5'
24851 5' -52.6 NC_005284.1 + 52578 0.66 0.836246
Target:  5'- gGGCAAggggcAGCCCGCuuucuCGCGUUGAccaaaGAGCg -3'
miRNA:   3'- -UCGUU-----UUGGGCG-----GCGCAGCUa----CUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.