miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24852 3' -54.7 NC_005284.1 + 7829 0.66 0.737127
Target:  5'- cGCuGACCGGuuGGCGGC---ACGAACUGa -3'
miRNA:   3'- uCG-CUGGCC--CCGUUGacuUGCUUGAU- -5'
24852 3' -54.7 NC_005284.1 + 11263 0.66 0.736062
Target:  5'- cAGCGGCUcgcgcggcgaaggGGGGCGguguucauucGCUGGaaaGCGAGCg- -3'
miRNA:   3'- -UCGCUGG-------------CCCCGU----------UGACU---UGCUUGau -5'
24852 3' -54.7 NC_005284.1 + 13243 0.66 0.693785
Target:  5'- cGGCGACCuGucuCAACUGAACGuGCUGa -3'
miRNA:   3'- -UCGCUGGcCcc-GUUGACUUGCuUGAU- -5'
24852 3' -54.7 NC_005284.1 + 7931 0.68 0.627155
Target:  5'- aAGCGcuucgggacaucGCCGGGGUAACggaGGGCGAcgACg- -3'
miRNA:   3'- -UCGC------------UGGCCCCGUUGa--CUUGCU--UGau -5'
24852 3' -54.7 NC_005284.1 + 14349 0.68 0.604868
Target:  5'- cAGCucgaGCCGGGuCGACUGAuCGAGCUu -3'
miRNA:   3'- -UCGc---UGGCCCcGUUGACUuGCUUGAu -5'
24852 3' -54.7 NC_005284.1 + 11634 0.68 0.576049
Target:  5'- cGCGAacUCGGGGCGAUgucGAugggugacaacgcgcGCGAGCUGa -3'
miRNA:   3'- uCGCU--GGCCCCGUUGa--CU---------------UGCUUGAU- -5'
24852 3' -54.7 NC_005284.1 + 21121 0.69 0.560655
Target:  5'- uGCGGaaGGGGCGACUuGGuACGAccGCUGg -3'
miRNA:   3'- uCGCUggCCCCGUUGA-CU-UGCU--UGAU- -5'
24852 3' -54.7 NC_005284.1 + 47784 0.69 0.549728
Target:  5'- aGGCGGCgcucgCGGaGGCGAC-GGGCGAGCg- -3'
miRNA:   3'- -UCGCUG-----GCC-CCGUUGaCUUGCUUGau -5'
24852 3' -54.7 NC_005284.1 + 18843 0.7 0.50676
Target:  5'- gGGCGugCaGGGGCAGCcGAgcACGGAUc- -3'
miRNA:   3'- -UCGCugG-CCCCGUUGaCU--UGCUUGau -5'
24852 3' -54.7 NC_005284.1 + 16146 0.7 0.455195
Target:  5'- cGCGcaGCCguGGGGCAcaucGCUGAugGGGCUc -3'
miRNA:   3'- uCGC--UGG--CCCCGU----UGACUugCUUGAu -5'
24852 3' -54.7 NC_005284.1 + 23887 0.74 0.28919
Target:  5'- gAGCGAgCGGGGCAguGCUGGGggauCGAGCc- -3'
miRNA:   3'- -UCGCUgGCCCCGU--UGACUU----GCUUGau -5'
24852 3' -54.7 NC_005284.1 + 10226 0.78 0.16843
Target:  5'- uGGCGACCGuGGGCAcgguggcgcuugggGCUGccGCGAACUGg -3'
miRNA:   3'- -UCGCUGGC-CCCGU--------------UGACu-UGCUUGAU- -5'
24852 3' -54.7 NC_005284.1 + 30858 1.07 0.001453
Target:  5'- gAGCGACCGGGGCAACUGAACGAACUAu -3'
miRNA:   3'- -UCGCUGGCCCCGUUGACUUGCUUGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.