Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24852 | 3' | -54.7 | NC_005284.1 | + | 7829 | 0.66 | 0.737127 |
Target: 5'- cGCuGACCGGuuGGCGGC---ACGAACUGa -3' miRNA: 3'- uCG-CUGGCC--CCGUUGacuUGCUUGAU- -5' |
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24852 | 3' | -54.7 | NC_005284.1 | + | 11263 | 0.66 | 0.736062 |
Target: 5'- cAGCGGCUcgcgcggcgaaggGGGGCGguguucauucGCUGGaaaGCGAGCg- -3' miRNA: 3'- -UCGCUGG-------------CCCCGU----------UGACU---UGCUUGau -5' |
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24852 | 3' | -54.7 | NC_005284.1 | + | 13243 | 0.66 | 0.693785 |
Target: 5'- cGGCGACCuGucuCAACUGAACGuGCUGa -3' miRNA: 3'- -UCGCUGGcCcc-GUUGACUUGCuUGAU- -5' |
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24852 | 3' | -54.7 | NC_005284.1 | + | 7931 | 0.68 | 0.627155 |
Target: 5'- aAGCGcuucgggacaucGCCGGGGUAACggaGGGCGAcgACg- -3' miRNA: 3'- -UCGC------------UGGCCCCGUUGa--CUUGCU--UGau -5' |
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24852 | 3' | -54.7 | NC_005284.1 | + | 11634 | 0.68 | 0.576049 |
Target: 5'- cGCGAacUCGGGGCGAUgucGAugggugacaacgcgcGCGAGCUGa -3' miRNA: 3'- uCGCU--GGCCCCGUUGa--CU---------------UGCUUGAU- -5' |
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24852 | 3' | -54.7 | NC_005284.1 | + | 14349 | 0.68 | 0.604868 |
Target: 5'- cAGCucgaGCCGGGuCGACUGAuCGAGCUu -3' miRNA: 3'- -UCGc---UGGCCCcGUUGACUuGCUUGAu -5' |
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24852 | 3' | -54.7 | NC_005284.1 | + | 47784 | 0.69 | 0.549728 |
Target: 5'- aGGCGGCgcucgCGGaGGCGAC-GGGCGAGCg- -3' miRNA: 3'- -UCGCUG-----GCC-CCGUUGaCUUGCUUGau -5' |
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24852 | 3' | -54.7 | NC_005284.1 | + | 21121 | 0.69 | 0.560655 |
Target: 5'- uGCGGaaGGGGCGACUuGGuACGAccGCUGg -3' miRNA: 3'- uCGCUggCCCCGUUGA-CU-UGCU--UGAU- -5' |
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24852 | 3' | -54.7 | NC_005284.1 | + | 18843 | 0.7 | 0.50676 |
Target: 5'- gGGCGugCaGGGGCAGCcGAgcACGGAUc- -3' miRNA: 3'- -UCGCugG-CCCCGUUGaCU--UGCUUGau -5' |
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24852 | 3' | -54.7 | NC_005284.1 | + | 16146 | 0.7 | 0.455195 |
Target: 5'- cGCGcaGCCguGGGGCAcaucGCUGAugGGGCUc -3' miRNA: 3'- uCGC--UGG--CCCCGU----UGACUugCUUGAu -5' |
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24852 | 3' | -54.7 | NC_005284.1 | + | 23887 | 0.74 | 0.28919 |
Target: 5'- gAGCGAgCGGGGCAguGCUGGGggauCGAGCc- -3' miRNA: 3'- -UCGCUgGCCCCGU--UGACUU----GCUUGau -5' |
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24852 | 3' | -54.7 | NC_005284.1 | + | 10226 | 0.78 | 0.16843 |
Target: 5'- uGGCGACCGuGGGCAcgguggcgcuugggGCUGccGCGAACUGg -3' miRNA: 3'- -UCGCUGGC-CCCGU--------------UGACu-UGCUUGAU- -5' |
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24852 | 3' | -54.7 | NC_005284.1 | + | 30858 | 1.07 | 0.001453 |
Target: 5'- gAGCGACCGGGGCAACUGAACGAACUAu -3' miRNA: 3'- -UCGCUGGCCCCGUUGACUUGCUUGAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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