miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24852 5' -61.7 NC_005284.1 + 34175 0.66 0.388688
Target:  5'- -gCG-UCCCCCaAGaUACguUGCCgCCGCUCa -3'
miRNA:   3'- gaGCuAGGGGG-UC-GUG--ACGG-GGCGAG- -5'
24852 5' -61.7 NC_005284.1 + 23167 0.66 0.380055
Target:  5'- -cCGAUCgUCgCGGCGC-GUUCCGCUCg -3'
miRNA:   3'- gaGCUAGgGG-GUCGUGaCGGGGCGAG- -5'
24852 5' -61.7 NC_005284.1 + 45416 0.66 0.380055
Target:  5'- -gUGAUCCCCU-GCGCaaGCCUcgCGCUCg -3'
miRNA:   3'- gaGCUAGGGGGuCGUGa-CGGG--GCGAG- -5'
24852 5' -61.7 NC_005284.1 + 45211 0.66 0.371552
Target:  5'- -gCGAUCgCCCUgcgcuuuggcgAGCGCUGCCugcgCCGcCUCg -3'
miRNA:   3'- gaGCUAG-GGGG-----------UCGUGACGG----GGC-GAG- -5'
24852 5' -61.7 NC_005284.1 + 38246 0.66 0.370709
Target:  5'- gCUCGAUCgauuguccuggugCCgCCAGCGC-GCCCgGCa- -3'
miRNA:   3'- -GAGCUAG-------------GG-GGUCGUGaCGGGgCGag -5'
24852 5' -61.7 NC_005284.1 + 34977 0.66 0.363179
Target:  5'- -aCGGUUCCCCGcGCGagagauCUGCCgCCGCg- -3'
miRNA:   3'- gaGCUAGGGGGU-CGU------GACGG-GGCGag -5'
24852 5' -61.7 NC_005284.1 + 18062 0.66 0.355756
Target:  5'- -aCGGcaagcUCCCCCAGUACaugggcucgagcagcGUCCCGUUCg -3'
miRNA:   3'- gaGCU-----AGGGGGUCGUGa--------------CGGGGCGAG- -5'
24852 5' -61.7 NC_005284.1 + 45695 0.67 0.300994
Target:  5'- uUCaGAUCCUgaCCGcGCaACUGCCCCGC-Cg -3'
miRNA:   3'- gAG-CUAGGG--GGU-CG-UGACGGGGCGaG- -5'
24852 5' -61.7 NC_005284.1 + 50337 0.67 0.300271
Target:  5'- gCUCGG-CCUCCAGCAgacgggcuuggagUUcGCCCUGCUUg -3'
miRNA:   3'- -GAGCUaGGGGGUCGU-------------GA-CGGGGCGAG- -5'
24852 5' -61.7 NC_005284.1 + 42588 0.68 0.279889
Target:  5'- -cCGGUCCCCa--CACcGCCCCGCcCg -3'
miRNA:   3'- gaGCUAGGGGgucGUGaCGGGGCGaG- -5'
24852 5' -61.7 NC_005284.1 + 54359 0.7 0.186787
Target:  5'- gUCGAg-CCCCAGCAUUGCgCCGaaaCUCg -3'
miRNA:   3'- gAGCUagGGGGUCGUGACGgGGC---GAG- -5'
24852 5' -61.7 NC_005284.1 + 9150 0.73 0.115634
Target:  5'- -aCGAgCCgCCAGC-CUGCCCCGCg- -3'
miRNA:   3'- gaGCUaGGgGGUCGuGACGGGGCGag -5'
24852 5' -61.7 NC_005284.1 + 30896 1.09 0.000213
Target:  5'- gCUCGAUCCCCCAGCACUGCCCCGCUCg -3'
miRNA:   3'- -GAGCUAGGGGGUCGUGACGGGGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.