miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24854 3' -60.9 NC_005284.1 + 4468 0.66 0.460882
Target:  5'- gGCCGAGCAaaaGCUGGCucGCG-GCGGcGGu -3'
miRNA:   3'- -CGGCUUGUcg-UGGCCG--CGCuCGCC-CU- -5'
24854 3' -60.9 NC_005284.1 + 16989 0.66 0.460882
Target:  5'- cGCCGAACGcGCACaCGGCGaCGAucgccgacGCGa-- -3'
miRNA:   3'- -CGGCUUGU-CGUG-GCCGC-GCU--------CGCccu -5'
24854 3' -60.9 NC_005284.1 + 22079 0.66 0.459927
Target:  5'- gGCCGGACugcgcgacggaaaAGCGCuUGGCGCuuGCGGu- -3'
miRNA:   3'- -CGGCUUG-------------UCGUG-GCCGCGcuCGCCcu -5'
24854 3' -60.9 NC_005284.1 + 17701 0.66 0.451373
Target:  5'- cGCCcuGAAUcuCGCCGGCGCGucgauGGCGGu- -3'
miRNA:   3'- -CGG--CUUGucGUGGCCGCGC-----UCGCCcu -5'
24854 3' -60.9 NC_005284.1 + 46548 0.66 0.441972
Target:  5'- uGCCGAGCcGCA---GCGCGAGCGacaucaGGAa -3'
miRNA:   3'- -CGGCUUGuCGUggcCGCGCUCGC------CCU- -5'
24854 3' -60.9 NC_005284.1 + 14695 0.66 0.432683
Target:  5'- uGCCGAcGCAGCAgUGGCGgauCGAGCa--- -3'
miRNA:   3'- -CGGCU-UGUCGUgGCCGC---GCUCGcccu -5'
24854 3' -60.9 NC_005284.1 + 22130 0.66 0.432683
Target:  5'- cGCCGAugcgggagagGCGGCAgCguGGCGCuaucgaacGAGCGGcGAu -3'
miRNA:   3'- -CGGCU----------UGUCGUgG--CCGCG--------CUCGCC-CU- -5'
24854 3' -60.9 NC_005284.1 + 38881 0.66 0.430838
Target:  5'- aGCCGGgaauCAGCACCGauaGCGCGcgcaccgccucuGCGGcGAc -3'
miRNA:   3'- -CGGCUu---GUCGUGGC---CGCGCu-----------CGCC-CU- -5'
24854 3' -60.9 NC_005284.1 + 26554 0.66 0.423508
Target:  5'- gGgCGGGCAGUaggugGCCGGCGaGAGUGGc- -3'
miRNA:   3'- -CgGCUUGUCG-----UGGCCGCgCUCGCCcu -5'
24854 3' -60.9 NC_005284.1 + 21309 0.66 0.423508
Target:  5'- uGUCGGcaGCAGCGCCGGC-CGA-CGGc- -3'
miRNA:   3'- -CGGCU--UGUCGUGGCCGcGCUcGCCcu -5'
24854 3' -60.9 NC_005284.1 + 23892 0.66 0.414451
Target:  5'- aGCgGGGCAGUGCUGGgGgauCGAGCcGGAa -3'
miRNA:   3'- -CGgCUUGUCGUGGCCgC---GCUCGcCCU- -5'
24854 3' -60.9 NC_005284.1 + 54690 0.66 0.414451
Target:  5'- cGCgCGAGCGGUugCGGUGaCGuGGUGGuGGc -3'
miRNA:   3'- -CG-GCUUGUCGugGCCGC-GC-UCGCC-CU- -5'
24854 3' -60.9 NC_005284.1 + 9232 0.66 0.414451
Target:  5'- cGUCGA--GGCGCUGacGCGCGcGGCGGGc -3'
miRNA:   3'- -CGGCUugUCGUGGC--CGCGC-UCGCCCu -5'
24854 3' -60.9 NC_005284.1 + 1210 0.66 0.405514
Target:  5'- uGCUGAcCGGCAUgGGCGCGcGCcGGc -3'
miRNA:   3'- -CGGCUuGUCGUGgCCGCGCuCGcCCu -5'
24854 3' -60.9 NC_005284.1 + 50092 0.66 0.405514
Target:  5'- aGCCGAACAGCAUCGagaaCGUaacGCGGcGAu -3'
miRNA:   3'- -CGGCUUGUCGUGGCc---GCGcu-CGCC-CU- -5'
24854 3' -60.9 NC_005284.1 + 46195 0.66 0.404627
Target:  5'- cGCCGAACgcgcagccucccgAGUcgugggagaACUGGCcgaccGCGGGUGGGAu -3'
miRNA:   3'- -CGGCUUG-------------UCG---------UGGCCG-----CGCUCGCCCU- -5'
24854 3' -60.9 NC_005284.1 + 23589 0.67 0.3967
Target:  5'- gGUCGAGCGGUucAUCGaCGCG-GCGGGu -3'
miRNA:   3'- -CGGCUUGUCG--UGGCcGCGCuCGCCCu -5'
24854 3' -60.9 NC_005284.1 + 46576 0.67 0.362701
Target:  5'- uGCCGAGCA-UGgCGGCGC-AGUGGGc -3'
miRNA:   3'- -CGGCUUGUcGUgGCCGCGcUCGCCCu -5'
24854 3' -60.9 NC_005284.1 + 182 0.67 0.354523
Target:  5'- cGCCGGACuggauugucGGCGa-GGCGCGGggcauGUGGGAg -3'
miRNA:   3'- -CGGCUUG---------UCGUggCCGCGCU-----CGCCCU- -5'
24854 3' -60.9 NC_005284.1 + 44864 0.68 0.346476
Target:  5'- cGCCGuACGccGCugCuGCGCGAGCGcGAg -3'
miRNA:   3'- -CGGCuUGU--CGugGcCGCGCUCGCcCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.